Glyma09g41220 - SoyBase

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Report for Sequence Feature Glyma09g41220

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45915126
stop:	45916334
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59320	AT	Annotation by Michelle Graham. TAIR10: lipid transfer protein 3 \| chr5:23929051-23929492 FORWARD LENGTH=115	SoyBase	E_val: 2.00E-12	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
PF00234	PFAM	Protease inhibitor/seed storage/LTP family	JGI		ISS
UniRef100_I1L715	UniRef	Annotation by Michelle Graham. Best UniRef hit: Non-specific lipid-transfer protein n=1 Tax=Glycine max RepID=I1L715_SOYBN	SoyBase	E_val: 9.00E-90	ISS
UniRef100_I1L715	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein n=1 Tax=Glycine max RepID=I1L715_SOYBN	SoyBase	E_val: 9.00E-90	ISS

Expression Patterns of Glyma09g41220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g41220 not represented in the dataset	Glyma09g41220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g41220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g275700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g41220

Limit To All Plant Sequences

>Glyma09g41220.1   sequence type=CDS   gene model=Glyma09g41220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACAACAAGACAGCATTTGCGAAGGCGAGTTGCATGGCTCTGATGGTGTGCATCGCGGCCGCCTTGGGTGCACCGTTTCTAGGAGCCATGGCTGAATTCACATGCTGCGAGATAAAACCTGTAATTGCAGCATGCGGAAGTTACGTGAAAACAGGTGGAAATAACATCCCAATGGAATGCTGCATGGCGGTTAGAAACCTAAGGGACATTGTCAGGAGATCTATGCATACTCAGTATCTAGCTTGTCTTTGCCTTCAAGATGTTGTTAAGCAACACCATCATACTATTAACACTACTGCGTATGAAAACCTTCCTTACAGCTGCGGCGTTGCCTTGCCCTACCATTTCACTCACGACATGGATTGCAACATCATAAGGTAA

Predicted protein sequences of Glyma09g41220

Limit To All Plant Sequences

>Glyma09g41220.1   sequence type=predicted peptide   gene model=Glyma09g41220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNKTAFAKASCMALMVCIAAALGAPFLGAMAEFTCCEIKPVIAACGSYVKTGGNNIPMECCMAVRNLRDIVRRSMHTQYLACLCLQDVVKQHHHTINTTAYENLPYSCGVALPYHFTHDMDCNIIR*

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