Glyma09g41140 - SoyBase

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Report for Sequence Feature Glyma09g41140

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45871591
stop:	45875048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02280	AT	Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein \| chr5:469377-470129 FORWARD LENGTH=141	SoyBase	E_val: 3.00E-89	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005801	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cis-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3368	KOG	Transport protein particle (TRAPP) complex subunit	JGI		ISS
PTHR23249	Panther	SYNBINDIN	JGI		ISS
PTHR23249:SF2	Panther	SYNBINDIN	JGI		ISS
PF04099	PFAM	Sybindin-like family	JGI		ISS
UniRef100_G7L8Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trafficking protein particle complex subunit n=2 Tax=Medicago truncatula RepID=G7L8Y7_MEDTR	SoyBase	E_val: 3.00E-94	ISS
UniRef100_I1L708	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L708_SOYBN	SoyBase	E_val: 6.00E-101	ISS

Expression Patterns of Glyma09g41140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g41140 not represented in the dataset	Glyma09g41140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g41140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g274900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g41140

Limit To All Plant Sequences

>Glyma09g41140.3   sequence type=transcript   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCTCATTTTTCTTTCTCTGGTCTCTGGTCATAAATCGTGTCGTGATTTCCCCCATTCTAGAGTGTGAATTCTGGATAAGTTTTTGGAATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAAATTTATATATGACTCTTCTAATTTCTATATTCTGATGAGTACATATAATCTGAAAATTGTCATTCAATTTCTTGTAAGGGACGAGTTTCTTTTACTACTCCTAGCCTTTGTATTTTATCAAGATTTACAATGTCTAAGACAAGTTTCCAGACATACGAGATTCTGCATTTCGAGCAATGTTTTTCATATGGTAGTAGTTAG

>Glyma09g41140.4   sequence type=transcript   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATGACTCATACTCTCATTTTTCTTTCTCTGGTCTCTGGTCATAAATCGTGTCGTGATTTCCCCCATTCTAGAGTATTCTGGATAAGTTTTTGGAATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAAATTTATATATGACTCTTCTAATTTCTATATTCTGATGAGTACATATAATCTGAAAATTGTCATTCAATTTCTTGTAAGGGACGAGTTTCTTTTACTACTCCTAGCCTTTGTATTTTATCAAGATTTACAATGTCTAAGACAAGTTTCCAGACATACGAGATTCTGCATTTCGAGCAATGTTTTTCATATGGTAGTAGTTAGAAATTGCTTGTGTATATGCCTACATAGTTACCTTGGCGTATGGTTTGTACTGCGGATGTAATTTATTTTCACATGGCAAACTTTGCGCATGCAAACCATATATAAGGTAACTATTTTTTT

Coding sequences of Glyma09g41140

Limit To All Plant Sequences

>Glyma09g41140.2   sequence type=CDS   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

>Glyma09g41140.3   sequence type=CDS   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

>Glyma09g41140.4   sequence type=CDS   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

Predicted protein sequences of Glyma09g41140

Limit To All Plant Sequences

>Glyma09g41140.2   sequence type=predicted peptide   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

>Glyma09g41140.3   sequence type=predicted peptide   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

>Glyma09g41140.4   sequence type=predicted peptide   gene model=Glyma09g41140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

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