SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38550 | AT | Annotation by Michelle Graham. TAIR10: Transmembrane proteins 14C | chr2:16132178-16134229 FORWARD LENGTH=335 | SoyBase | E_val: 2.00E-71 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG4267 | KOG | Predicted membrane protein | JGI | ISS | |
| PF03647 | PFAM | Transmembrane proteins 14C | JGI | ISS | |
| UniRef100_I1L702 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L702_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q39364 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Non-green plastid inner envelope membrane protein n=1 Tax=Brassica oleracea RepID=Q39364_BRAOL | SoyBase | E_val: 1.00E-69 | ISS |
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Glyma09g41100 not represented in the dataset |
Glyma09g41100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g44591 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g274500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41100.1 sequence type=CDS gene model=Glyma09g41100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAGTTTCTCCTTGGATTCAGTTTCGGTGTTAAACCCTAAACTCTCCCACTCCCATTTCTCTCTCCCATTCAACAGGTTCCCCCATTCCCTCAACTTCCACCCCTTACTCAAACCCCGCGCAGTTAACGCCGCCGTCCCCCCTAACGGCCTCGCCGCCTGCTACCTCACCCTCCACCGACGGAAACCGTTAACCGTCGCTTTCACAGCTTCTCCCCAAGACTCCGAACACGGAGAGATTGAAGTGGAGAAGGAGCGTGACGTCCACGCGGGCTCTGAAGAATCTCAGGAAGCATGGAAGCAGGCTCTGGACACGTTCAGGGAACAGGCGGAGAAGTTTCAGGGCGTTTCTCAGGAGGCTTATGAGGTGTACTCTAAGAAGACTGCAGAGCAGTTGAAGGTGCTGGCAGATAAGACGAAGAATGAGTTGAGTGTGGCAGCGAAGGAAATCACTGACGAAGGGAAAGAGTATTTGTCCGCAGTGGCGGATAGTTCACCAGAGGTGAAGGAGATTGTGGAAACGTTTACCTCGCCACCTGAGGATATCCAGAAATTGTCTGGAGTGAGGGACTTCTATGTTGGTGTACCTTATGGTTTGTTGCTTTCTCTTGGTGGTTTCCTTTCCTTTATGGTAACAGGCAACACTGCAGCGATAAGGTTTGGGATGATTTTAGGTGGTGCCCTCCTGGCTTTAAGCATTTTAAGTCTGAAATCATACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGCTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGGATCATCTTATTTCACTGCCTTGATCAGTGGTGCAGTGGTGGCATTCTATATCTTTAGAATAGTACTGGAACGTAATCAACAGAAGGCCTCAAACTTGGAAACTGAACCAGGAAACTAG
>Glyma09g41100.1 sequence type=predicted peptide gene model=Glyma09g41100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSFSLDSVSVLNPKLSHSHFSLPFNRFPHSLNFHPLLKPRAVNAAVPPNGLAACYLTLHRRKPLTVAFTASPQDSEHGEIEVEKERDVHAGSEESQEAWKQALDTFREQAEKFQGVSQEAYEVYSKKTAEQLKVLADKTKNELSVAAKEITDEGKEYLSAVADSSPEVKEIVETFTSPPEDIQKLSGVRDFYVGVPYGLLLSLGGFLSFMVTGNTAAIRFGMILGGALLALSILSLKSYKKGRTSPLALKGQAAIASILFLREISSIGKGSSYFTALISGAVVAFYIFRIVLERNQQKASNLETEPGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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