SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04930 | AT | Annotation by Michelle Graham. TAIR10: aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004012 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid-translocating ATPase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0206 | KOG | P-type ATPase | JGI | ISS | |
| PTHR24092 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24092:SF14 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_B9SRT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipid-transporting atpase, putative n=1 Tax=Ricinus communis RepID=B9SRT5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338D05 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338D05 related cluster n=1 Tax=unknown RepID=UPI0002338D05 | SoyBase | E_val: 0 | ISS |
|
Glyma09g41040 not represented in the dataset |
Glyma09g41040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g44550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g273900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41040.1 sequence type=CDS gene model=Glyma09g41040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTAATGAGTCCTTGCTTTTGGAATCATCGGATTCTCGTCCAGTGATTCATCACCGCCGCGGGAAATCGGGTTCCCGGAGCTACCTCTCCCTCCATGGTTCCTTCTCTTCTTCCGCCTTTGATGATGCTTTCGCTGAGAGCATCGTTTTGGATGTGAAGGAACGAGACGGTGGGGACGTTGTGTTGTCTAGAGATTGTAGTCTCTACACTGCAGCGTTTGGGAATAATATTAGCGGTTCTGAGGCTCAGTCCCCGTGGCAGTTTCCCTTGGAATGCCCCCAGCCCGAGACGAAGAGCCCGGTATCTTGGGGTGCAATGGAACTGCCTGATGCCGCCAATAGCCGTAGCGTGCCATTCGAGATATCCGGAGCTTCATCTCAGGTGCAGGACAGCAGGTTGAATGGTAAATCACAGAGAATTCGGCACAAAAGTTTGCAATTTGATGATGCTGCCTTACATGAGGACAGTGCCAGGCTGATTTATATCAATGATCCGAGGAGGACGAATGATAAGTATGAGTTCACCGGGAATGAGATCCGGACTAGCAGATACACCTTTGTTACCTTTTTGCCCAAGAATCTCTTCATTCAGTTTCATCGGGTGGCTTATCTGTATTTCCTTGCTATTGCTGCGCTCAATCAGCTTCCGCCACTGGCTGTGTTTGGGAGGACTGTGTCACTTTTCCCGCTTTTGTTTGTTCTTTGTGTCACGGCTATTAAGGATGGCTATGAGGATTGGCGGAGGCACAGGTCAGATCGCAATGAGAACAACCGGGAGTCTCTGGTGCTTCAGTCCGGTGATTTCCGATCAAAGAAATGGAAGAAAATACAAGCTGGTGAGGTTGTTAAGATCTTTGCCGATGAGACAATTCCAGCTGACATGGTCTTGTTGGGGACGAGTGATCAAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAATCAAATTTGAAGACAAGGTATGCTAGGCAGGAAACAGCTTCAGCGGTTGCATCAGAAGCTTGTGATGTTTTTGGTGTAATTAGATGTGAGCAACCGAACCGGAATATTTATGAGTTCACGGCCAACATGGAGTTCAATGGGCTAAAGTTTTCCCTTAGCCAGTCAAACATTGTTCTGCGTGGTTGCCAATTGAAGAACACAGATTGGATAATTGGTGTTGTAGTCTATGCAGGACAGGAAACAAAAGCAATGTTGAACAGTGCAGCTTCTCCTTCCAAGAGAAGCAGACTGGAAACTTACATGAACAGAGAAACCCTTTGGTTGTCAATTTTTCTTTTTATCATGTGTTTGGTTGTGGCCATTGGGATGTGTCTTTGGTTGGTACGCCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACTTCACCAATGGACCGGATAATGGAAAGAAATATAAGTATTATGGGATACCAATGGAAGCATTTTTTTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTAGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACAGGGATATGTATGATGCCTGCTCTGGGTCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAAATGGAATTCCAGAGGGCTAGTGTACATGGGAAGAATTACGGGAGCTCCTTGCCTATGGTTGATAATACAGCAGCAGCAGCAGATGTTATTCCTAAACGGAGTTGGAAGCTCAAATCTGCAATTGCAGTTGATTCTGAACTGATGACAATGTTGCAGAAAGACTCAAATAGAGAAGAAAAAATTGCTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAACACTGTAATCCCTATACTTGGTGATGATGAATTTTCTAGTATTGGAACTAATGAAGTAAATGAAGATATTAGACGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCGGCCTCTGCATATGGATATACTCTTTTTGAACGCACATCTGGACATATTGTTATTGATGTCAACGGTGAGAAACTCAGATTGGATGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGAAAATGGCAGTGAGAGTAACAATAACATATGGCATGCAACTCAGAGCCATTTGAATGAATATTCTTCACAAGGTTTGCGCACTCTTGTAGTAGCCTCCAGGGATCTTTCTGGTGCTGAACATGAGGAGTGGCAAAGCAGGTATGAAGAGGCAAGCACTTCGTTGACTGACAGAGCTACTAAACTACGGCAAACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAAGAGGGTGTACCAGAAGCAATTGAGGCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACGGCAATTTCAATTGGTCTTTCCTGCAAACTTCTTAGTGGAGACATGCAGCAGATTATTATAAATGGCACTTCAGAGGTTGAATGTAGAAATCTTTTGGCTGATGCTAAAGCCAAATATGGTGTGAAATCATCAAGTGGAGGGTGTCGGAATCAAAAGCACAAAACCAATGCTGGACATGGTGATCTTGATATTCCCAATGGTTCAAAGTCTTTGAGCTTTCCCAAATGTAATCCTGGAAACGAAGAAGGAACTGATGCTCCATTGGCACTCATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCGACCTTGCAACTTCCTGTAGGGTTGTGCTGTGTTGTCGAGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATTTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAGTTTCAGTTCTTGAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTAATGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCGCTGACGGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTATACCTACCATTATTGTTGGTATTCAGGACAAGGACTTGAGCCATAGGACACTCTTGCAGTATCCGAAACTGTATGGTGCAGGTCACAGGCAAGAAGCTTACAATATGCAATTATTTTGGATCACAATGATGGACACAGTATGGCAGAGCCTTGTTCTTTTCTACATCCCATTGTTCACCTATAAGGACAGTTCAATTGACATATGGAGCATGGGCAGTTTGTGGACGATTGCAGTTGTTATCCTTGTAAATGTACACCTTGCTATGGACATCAACCGTTGGGTATTAATTACTCATGTTGCTATCTGGGGATCAATAATCATTACATATGGTTGCATGGTGGTACTGGATTCTATACCTGTGTTTCCCAATTACTGGACTATTTATCATCTGGCAAGGTCCCCTACATATTGGATAACAATTTTGCTTATAATTATTGTGGCATTGCTCCCTCGCTTTACTTGCAAAGTTGTTTATCAAATCTTTTGGCCTTCGGATATCCAGATAGCTAGAGAAGCTGAGTTAATGAGAAAACGACATGATAATTTGCAGCCGAGGCAACAAGTTTCCAGTTAA
>Glyma09g41040.1 sequence type=predicted peptide gene model=Glyma09g41040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSNESLLLESSDSRPVIHHRRGKSGSRSYLSLHGSFSSSAFDDAFAESIVLDVKERDGGDVVLSRDCSLYTAAFGNNISGSEAQSPWQFPLECPQPETKSPVSWGAMELPDAANSRSVPFEISGASSQVQDSRLNGKSQRIRHKSLQFDDAALHEDSARLIYINDPRRTNDKYEFTGNEIRTSRYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSKKWKKIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASAVASEACDVFGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLETYMNRETLWLSIFLFIMCLVVAIGMCLWLVRHKNQLDTLPYYRKRYFTNGPDNGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDACSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASVHGKNYGSSLPMVDNTAAAADVIPKRSWKLKSAIAVDSELMTMLQKDSNREEKIAAHEFFLTLAACNTVIPILGDDEFSSIGTNEVNEDIRRIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILENGSESNNNIWHATQSHLNEYSSQGLRTLVVASRDLSGAEHEEWQSRYEEASTSLTDRATKLRQTAALIESNLKLLGATGIEDKLQEGVPEAIEALRQAGIKVWVLTGDKQETAISIGLSCKLLSGDMQQIIINGTSEVECRNLLADAKAKYGVKSSSGGCRNQKHKTNAGHGDLDIPNGSKSLSFPKCNPGNEEGTDAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVMMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIIVGIQDKDLSHRTLLQYPKLYGAGHRQEAYNMQLFWITMMDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHVAIWGSIIITYGCMVVLDSIPVFPNYWTIYHLARSPTYWITILLIIIVALLPRFTCKVVYQIFWPSDIQIAREAELMRKRHDNLQPRQQVSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
