Glyma09g41000 - SoyBase

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Report for Sequence Feature Glyma09g41000

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45772848
stop:	45775814
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01930	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein \| chr5:361189-362867 REVERSE LENGTH=448	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF00150	PFAM	Cellulase (glycosyl hydrolase family 5)	JGI		ISS
UniRef100_G7LAQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mannan endo-1,4-beta-mannosidase n=1 Tax=Medicago truncatula RepID=G7LAQ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L6Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6Z0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g41000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g41000

Paralog	Evidence	Comments
Glyma18g44810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g41000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g273500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g41000

Limit To All Plant Sequences

>Glyma09g41000.1   sequence type=CDS   gene model=Glyma09g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAACTTGAGATGTTCACATATATATTATGGTCCAAAGGAGCACATAGACACCATGACTAGGCAACCAAGCTCAATGGAGAGCTTTGGTGTGTGCATTATTTCTTTGATTCTTCTTTTGATGCTTACTAAAAATTTAAGTTCCAATGCACTTGGTGACAGTATAAAGGATGAGGAAGGACTCAAAGAAGACCAAAATGAAATGGAAAATTCTCTCTCAAATAATGATGAAATGAGGGGCATGAAAGATGATGATTGGCAGATGGTGCAAAAGAAAGGAAACCAATTTGTGGTGAATGACAAACCTTTCTATGTCAATGGATTCAACACGTATTGGCTGATGGTATTTGCTGCAGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACAAGCATCCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCATTCAATGATGGCCAGTGGAGGGCCCTACAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCAAGGCTTTGGATTTTGTGGTAAGTGAAGCAAAGAAATACAAAATCAGGCTTATATTATCATTGGCCAACAACTGGGAGGCATATGGAGGCAAAGCACAATATGTGAAATGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTACTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATGTTAAGACTGTGCTCAATAGAGTTAACACATTCACAAACATCACTTATAAGGAAGATCCAACAATTTTCGCTTGGGAATTGATGAATGAGCCTCGTTGCACCTCAGATCCAACTGGTGACAAGTTACAGGATTGGATACAAGAAATGGCTTTCCATGTGAAGAAAATTGATCCAAAACACCTAGTGGAGGTCGGAGTAGAAGGATTTTATGGGCCATCAACACCTCAGAGAACTCAGCTCAATCCCAATACATATGCTACACAGGTTGGAACTGATTTTATCCGGAACCACCTGGTTCTTGGTGTGGACTTCGCTTCTGTTCACATGTATCCTGACTCTTGGATTTCACAACAAATTGCTGATACACATATCCCATTTGTAAAATCATGGATGGAAGCCCATATAGAGGATGCTGAAAGGTATCTTGGAATGCCAGTTGTTTTTGCGGAGTTTGGTGTATCTTCCAAAGACCCTGGCTATAATTCATCATATAGAGACACGGTTATAAGCACTGTGTACAGTACCATCCTAAACTCCACAAAGAAAGGAGGGAGTGGGGCTGGAAGCCTTTTGTGGCAATTTTTTCCTGATGGAACCGATAACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCTCCTTCTACCTCAAGCATTATACAACTTCAATCCACTAGGCTTGCACTGTTTAATTCCTTGTGCAACACCAAATGCAATTGGGGTTGTAAGAAGAAAAAATTGTTGGAGGAAATACTCTATCATGACGAACTGTAA

Predicted protein sequences of Glyma09g41000

Limit To All Plant Sequences

>Glyma09g41000.1   sequence type=predicted peptide   gene model=Glyma09g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENLRCSHIYYGPKEHIDTMTRQPSSMESFGVCIISLILLLMLTKNLSSNALGDSIKDEEGLKEDQNEMENSLSNNDEMRGMKDDDWQMVQKKGNQFVVNDKPFYVNGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLILSLANNWEAYGGKAQYVKWGNAAGLNLTSDDDFYSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDPTGDKLQDWIQEMAFHVKKIDPKHLVEVGVEGFYGPSTPQRTQLNPNTYATQVGTDFIRNHLVLGVDFASVHMYPDSWISQQIADTHIPFVKSWMEAHIEDAERYLGMPVVFAEFGVSSKDPGYNSSYRDTVISTVYSTILNSTKKGGSGAGSLLWQFFPDGTDNMDDGYAIVLSKSPSTSSIIQLQSTRLALFNSLCNTKCNWGCKKKKLLEEILYHDEL*

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