Glyma09g40960 - SoyBase

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Report for Sequence Feature Glyma09g40960

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45742992
stop:	45747325
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41700	AT	Annotation by Michelle Graham. TAIR10: ubiquitin conjugating enzyme 8 \| chr5:16676072-16677223 FORWARD LENGTH=148	SoyBase	E_val: 7.00E-107	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0051049	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transport	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0417	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24068	Panther	FAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_B7FMV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein n=1 Tax=Medicago truncatula RepID=B7FMV8_MEDTR	SoyBase	E_val: 1.00E-104	ISS
UniRef100_I1L6Y4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Papilionoideae RepID=I1L6Y4_SOYBN	SoyBase	E_val: 1.00E-105	ISS

Expression Patterns of Glyma09g40960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40960

Paralog	Evidence	Comments
Glyma18g44850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g273100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40960

Limit To All Plant Sequences

>Glyma09g40960.2   sequence type=transcript   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGCCAACCAGAAAAGGGCTGGGTATTTTTGAGTGTGTGAGAGAGCGAGCGAGCGAGCAGTTTCAAAGAGAGGATTTGGGATTGGGAAGGCGAGGGATTGCGCTGCGTCTCTTCCTCTTCTCTTTCGATTCATCCCTCATTCATAATCTTCCAATCCAACAACCTCAGCCTCACACTCACACATACACACATCTGAACGCGTATCGTCCCTCCCATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGCTGAGGACATGTTCCATTGGCAAGCAACGATTATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTTCCTCCGGATTATCCTTTCAAACCTCCCAAGGTTGCCTTTAGGACTAAGGTGTTTCATCCGAACATCAACAGCAATGGTAGCATTTGTCTTGATATCCTTAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGATTTGTGTTTAGATAATGTATATTGAAATGGATGGCATCTATGAAAACTTTTGTGGGTTTGCTTTTCTCTTCCTGTTTTTCTGGGGTAAGATTATGTTTGTTATGAGGGGATAGGGAAGGGCGGTGTCTTAATTTGATAAAAATAACTATGTTCAACAACCACTGTGATGTTTTTATCATGATGCGAACGCATGAACAAGATGTTATTTGTGTCATGGCTGTGGTGTTACTCTATGAAGTAATGTAGAAATAGTCATATGTTTTAAACAGCTTTTTCCAAGAAAAATAATCACGTTTTACGAAAGCATTTTTTTGAATGCCAGTAAAATTAATTGGTTCTTCAAAATA

>Glyma09g40960.3   sequence type=transcript   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGCCAACCAGAAAAGGGCTGGGTATTTTTGAGTGTGTGAGAGAGCGAGCGAGCGAGCAGTTTCAAAGAGAGGATTTGGGATTGGGAAGGCGAGGGATTGCGCTGCGTCTCTTCCTCTTCTCTTTCGATTCATCCCTCATTCATAATCTTCCAATCCAACAACCTCAGCCTCACACTCACACATACACACATCTGAACGCGTATCGTCCCTCCCATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGGGTTGAATGAAATAGATTAAATAAAGCACGGAAATTGCTGTTTCTGCTGCACTTAGTATGCCCTGAACGTGTCGTGGTGGACCGTGTTTTAAAACAGCGTGTCTGTATTTGTTATGATGTTGAGTTTGAGCATTATATGTTTGTTGTAGTATATACAAATGCAATTGTTTATTTTACAGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACGATTATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTTCCTCCGGATTATCCTTTCAAACCTCCCAAGGTTGCCTTTAGGACTAAGGTGTTTCATCCGAACATCAACAGCAATGGTAGCATTTGTCTTGATATCCTTAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGATTTGTGTTTAGATAATGTATATTGAAATGGATGGCATCTATGAAAACTTTTGTGGGTTTGCTTTTCTCTTCCTGTTTTTCTGGGGTAAGATTATGTTTGTTATGAGGGGATAGGGAAGGGCGGTGTCTTAATTTGATAAAAATAACTATGTTCAACAACCACTGTGATGTTTTTATCATGATGCGAACGCATGAACAAGATGTTATTTGTGTCATGGCTGTGGTGTTACTCTATGAAGTAATGTAGAAATAGTCATATGTTTTAAACAGCTTTTTCCAAGAAAAATAATCACGTTTTACGAAAGCATTTTTTTGAATGCCAGTAAAATTAATTGGTTCTTCAAAATA

Coding sequences of Glyma09g40960

Limit To All Plant Sequences

>Glyma09g40960.1   sequence type=CDS   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACGATTATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTTCCTCCGGATTATCCTTTCAAACCTCCCAAGGTTGCCTTTAGGACTAAGGTGTTTCATCCGAACATCAACAGCAATGGTAGCATTTGTCTTGATATCCTTAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA

>Glyma09g40960.2   sequence type=CDS   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAAGCGCATCCTCAAGGAGCTCAAGGACTTGCAGAAAGACCCACCAACTTCTTGCAGCGCTGCTGAGGACATGTTCCATTGGCAAGCAACGATTATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTTCCTCCGGATTATCCTTTCAAACCTCCCAAGGTTGCCTTTAGGACTAAGGTGTTTCATCCGAACATCAACAGCAATGGTAGCATTTGTCTTGATATCCTTAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA

>Glyma09g40960.3   sequence type=CDS   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTTGTAGTATATACAAATGCAATTGTTTATTTTACAGGTCCAGTAGCTGAGGACATGTTCCATTGGCAAGCAACGATTATGGGTCCTGCTGATAGTCCTTATGCTGGAGGTGTATTCCTAGTCACTATTCACTTTCCTCCGGATTATCCTTTCAAACCTCCCAAGGTTGCCTTTAGGACTAAGGTGTTTCATCCGAACATCAACAGCAATGGTAGCATTTGTCTTGATATCCTTAAGGAGCAGTGGAGCCCTGCACTCACCATCTCTAAGGTACTGCTTTCTATCTGCTCATTGCTGACTGATCCAAATCCTGATGATCCACTTGTTCCGGAAATCGCTCACATGTACAAAACTGACCGGGCCAAGTATGAGGCCACTGCACGCAGCTGGACCCAGAAGTATGCCATGGGCTGA

Predicted protein sequences of Glyma09g40960

Limit To All Plant Sequences

>Glyma09g40960.1   sequence type=predicted peptide   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*

>Glyma09g40960.2   sequence type=predicted peptide   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQKDPPTSCSAAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*

>Glyma09g40960.3   sequence type=predicted peptide   gene model=Glyma09g40960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVVVYTNAIVYFTGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG*

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