SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g40941

Feature Type:gene_model
Chromosome:Gm09
Start:45726090
stop:45729777
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g40941
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58300AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF779Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_B9SRR7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nodulation receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9SRR7_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002338B9AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338B9A related cluster n=1 Tax=unknown RepID=UPI0002338B9A SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g40941
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g40941 not represented in the dataset
Glyma09g40941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40941
ParalogEvidenceComments
Glyma18g44870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40941 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g272900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g40941
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma09g40941
>Glyma09g40941.2   sequence type=transcript   gene model=Glyma09g40941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGGCTTCATGAGGAAGAAGGCTTCAAGCTGAAGCTGATACTTGAACGTTGAATGTGTGCCTCCCAAATCATAAACAGGAAAACCAAAAGGAAACAAGTGGAATCATTGAAACCAGACAACGAGTTCCAGCACCTTGATTCAACAGTAAAACTTGATCATGCTACTACAGTCCTACTTTACCACAATACCAATTTTCCTACTCCTGCTTGTGTTTCCTCACACTAAAGCTAATCTACATTCAGAAAAGCAAGCCCTCCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGCAGTCATGATGGTTCCCATGTTCTTTCTGTGAGGCTTCCAGGTGTCGGATTGCGCGGTTCTCTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAACTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTGAAATTCCTGATTCTCTGCCACCGCGGCTTATCTTTCTTGATTTGTCCCATAACTCTTTCACAGGACAAATTCCAGCCTCAATCCAAAACTTGACACATTTGATAGGACTTAACCTCCGAAAAAACTCTCTCACAGGACCTATTCCTGATGTTAACCTTCCTAGCCTTAAGGATTTGGATTTGAGCTTCAACTACTTGAATGGCTCTATTCCTTCAGGTCTCCATAAGTTCCATGCCTCCTCATTTAGAGGTAATTTGATGTTATGTGGAGCACCTTTGAAACAATGTTCTTCAGTTTCCCCTAATACCACATTGTCTCCACTAACAGTCTCAGAGAGACCAAGTGATCTATCAAACAGGAAAATGAGCGAGGGAGCAAAAATAGCAATTGTTTTGGGGGGTGTCACATTGCTGTTTCTTCCAGGTCTTTTGGTAGTGTTCTTCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTAGCACCTGCAGAGAAAGGTCAGAAGCTTAAGCAGGACTTTGGGAGTGGTGTGCAAGAATCTGAGCAAAACAAGCTTGTATTCTTTGAGGGTTGTTCTTATAATTTTGATCTGGAGGACATGTTAAGAGCTTCAGCTGAAGTTCTTGGGAAGGGAAGTTGTGGAACAACATACAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAGAGAAGTGGCAATGGGGAAAAAAGAGTTTGAACAGCAAATGGAGATTGTCCAGAGACTTGATCATCATCAAAATGTGATTCCCCTTCGTGCTTACTACTATTCCAAAGATGAAAAACTAATGGTTTATGACTACTCAACAGCCGGCAGTTTTTCCAAGCTATTGCATGGAACAACGGAAACTGGACGAGCTCCACTAGATTGGGATACAAGGTTGAAGATCATGGTCGGAGCTGCTAGGGGCATTGCTCATATCCACTCAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCTCAATAGATCTCCAAGGCTGCATATCAGATTTTGGCCTAACTCCCCTAACAAATTTCTGTGCCTCCTCCAGAAGTCCAGGCTATGGAGCACCTGAAGTTATCGAATCACGAAAGTCCACTAAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTCCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGTGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGCGTGGCAGCGATGCCGGACACGAGGCCTTCCATGGAGGAAGTTGTCAAGACAATTGAAGAAATTAGAGCATCCATTTATTAAAACCAGCCATCATTCTCAGAGGACAAGTTCAAAGGGTCCTATGGTTTCACTCTATATAACTAAATGGAAAGCTACTTAGCAGAGGAAGATGCATGAATATTTTCCACATGCCCGGGGCAACAAACTGCAAGAACAATATCCATCCATTGCCTATATACTTCGAATCATACATATTCAAGATTCGTTGGAGGTCTTAGCATCAAAAGAAAAATACTTTTATTTTTATCTATCTTGCCATTTTTTCTTTTTTACCTTTTCATGATTTCTTGTTTAAAACCACACTGAAGTAATAAATCAAAATTTGGTCAACATCTGATTCAGTTTCA
Coding sequences of Glyma09g40941
>Glyma09g40941.1   sequence type=CDS   gene model=Glyma09g40941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACTACAGTCCTACTTTACCACAATACCAATTTTCCTACTCCTGCTTGTGTTTCCTCACACTAAAGCTAATCTACATTCAGAAAAGCAAGCCCTCCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGCAGTCATGATGGTTCCCATGTTCTTTCTGTGAGGCTTCCAGGTGTCGGATTGCGCGGTTCTCTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAACTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTGAAATTCCTGATTCTCTGCCACCGCGGCTTATCTTTCTTGATTTGTCCCATAACTCTTTCACAGGACAAATTCCAGCCTCAATCCAAAACTTGACACATTTGATAGGACTTAACCTCCGAAAAAACTCTCTCACAGGACCTATTCCTGATGTTAACCTTCCTAGCCTTAAGGATTTGGATTTGAGCTTCAACTACTTGAATGGCTCTATTCCTTCAGGTCTCCATAAGTTCCATGCCTCCTCATTTAGAGGTAATTTGATGTTATGTGGAGCACCTTTGAAACAATGTTCTTCAGTTTCCCCTAATACCACATTGTCTCCACTAACAGTCTCAGAGAGACCAAGTGATCTATCAAACAGGAAAATGAGCGAGGGAGCAAAAATAGCAATTGTTTTGGGGGGTGTCACATTGCTGTTTCTTCCAGGTCTTTTGGTAGTGTTCTTCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTAGCACCTGCAGAGAAAGGTCAGAAGCTTAAGCAGGACTTTGGGAGTGGTGTGCAAGAATCTGAGCAAAACAAGCTTGTATTCTTTGAGGGTTGTTCTTATAATTTTGATCTGGAGGACATGTTAAGAGCTTCAGCTGAAGTTCTTGGGAAGGGAAGTTGTGGAACAACATACAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAGAGAAGTGGCAATGGGGAAAAAAGAGTTTGAACAGCAAATGGAGATTGTCCAGAGACTTGATCATCATCAAAATGTGATTCCCCTTCGTGCTTACTACTATTCCAAAGATGAAAAACTAATGGTTTATGACTACTCAACAGCCGGCAGTTTTTCCAAGCTATTGCATGGAACAACGGAAACTGGACGAGCTCCACTAGATTGGGATACAAGGTTGAAGATCATGGTCGGAGCTGCTAGGGGCATTGCTCATATCCACTCAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCTCAATAGATCTCCAAGGCTGCATATCAGATTTTGGCCTAACTCCCCTAACAAATTTCTGTGCCTCCTCCAGAAGTCCAGGCTATGGAGCACCTGAAGTTATCGAATCACGAAAGTCCACTAAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTCCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGTGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGCGTGGCAGCGATGCCGGACACGAGGCCTTCCATGGAGGAAGTTGTCAAGACAATTGAAGAAATTAGAGCATCCATTTATTAA

>Glyma09g40941.2   sequence type=CDS   gene model=Glyma09g40941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACTACAGTCCTACTTTACCACAATACCAATTTTCCTACTCCTGCTTGTGTTTCCTCACACTAAAGCTAATCTACATTCAGAAAAGCAAGCCCTCCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAAAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGCAGTCATGATGGTTCCCATGTTCTTTCTGTGAGGCTTCCAGGTGTCGGATTGCGCGGTTCTCTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAACTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTGAAATTCCTGATTCTCTGCCACCGCGGCTTATCTTTCTTGATTTGTCCCATAACTCTTTCACAGGACAAATTCCAGCCTCAATCCAAAACTTGACACATTTGATAGGACTTAACCTCCGAAAAAACTCTCTCACAGGACCTATTCCTGATGTTAACCTTCCTAGCCTTAAGGATTTGGATTTGAGCTTCAACTACTTGAATGGCTCTATTCCTTCAGGTCTCCATAAGTTCCATGCCTCCTCATTTAGAGGTAATTTGATGTTATGTGGAGCACCTTTGAAACAATGTTCTTCAGTTTCCCCTAATACCACATTGTCTCCACTAACAGTCTCAGAGAGACCAAGTGATCTATCAAACAGGAAAATGAGCGAGGGAGCAAAAATAGCAATTGTTTTGGGGGGTGTCACATTGCTGTTTCTTCCAGGTCTTTTGGTAGTGTTCTTCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTAGCACCTGCAGAGAAAGGTCAGAAGCTTAAGCAGGACTTTGGGAGTGGTGTGCAAGAATCTGAGCAAAACAAGCTTGTATTCTTTGAGGGTTGTTCTTATAATTTTGATCTGGAGGACATGTTAAGAGCTTCAGCTGAAGTTCTTGGGAAGGGAAGTTGTGGAACAACATACAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAGAGAAGTGGCAATGGGGAAAAAAGAGTTTGAACAGCAAATGGAGATTGTCCAGAGACTTGATCATCATCAAAATGTGATTCCCCTTCGTGCTTACTACTATTCCAAAGATGAAAAACTAATGGTTTATGACTACTCAACAGCCGGCAGTTTTTCCAAGCTATTGCATGGAACAACGGAAACTGGACGAGCTCCACTAGATTGGGATACAAGGTTGAAGATCATGGTCGGAGCTGCTAGGGGCATTGCTCATATCCACTCAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCTCAATAGATCTCCAAGGCTGCATATCAGATTTTGGCCTAACTCCCCTAACAAATTTCTGTGCCTCCTCCAGAAGTCCAGGCTATGGAGCACCTGAAGTTATCGAATCACGAAAGTCCACTAAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTCCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGTGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGCGTGGCAGCGATGCCGGACACGAGGCCTTCCATGGAGGAAGTTGTCAAGACAATTGAAGAAATTAGAGCATCCATTTATTAA
Predicted protein sequences of Glyma09g40941
>Glyma09g40941.1   sequence type=predicted peptide   gene model=Glyma09g40941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLQSYFTTIPIFLLLLVFPHTKANLHSEKQALLDFAAALHHGPKVNWNSSTSICTSWVGVTCSHDGSHVLSVRLPGVGLRGSLPPNTLGKLNGLISLSLRSNSLRGNLPTDLLSLPSLRFVYLQHNNFSGEIPDSLPPRLIFLDLSHNSFTGQIPASIQNLTHLIGLNLRKNSLTGPIPDVNLPSLKDLDLSFNYLNGSIPSGLHKFHASSFRGNLMLCGAPLKQCSSVSPNTTLSPLTVSERPSDLSNRKMSEGAKIAIVLGGVTLLFLPGLLVVFFCFKKKVGEQNVAPAEKGQKLKQDFGSGVQESEQNKLVFFEGCSYNFDLEDMLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLREVAMGKKEFEQQMEIVQRLDHHQNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTTETGRAPLDWDTRLKIMVGAARGIAHIHSANGRKLVHGNIKSSNVILSIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIESRKSTKKSDVYSFGVLLLEMLTGKTPVQYSGHDEVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAAMPDTRPSMEEVVKTIEEIRASIY*

>Glyma09g40941.2   sequence type=predicted peptide   gene model=Glyma09g40941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLQSYFTTIPIFLLLLVFPHTKANLHSEKQALLDFAAALHHGPKVNWNSSTSICTSWVGVTCSHDGSHVLSVRLPGVGLRGSLPPNTLGKLNGLISLSLRSNSLRGNLPTDLLSLPSLRFVYLQHNNFSGEIPDSLPPRLIFLDLSHNSFTGQIPASIQNLTHLIGLNLRKNSLTGPIPDVNLPSLKDLDLSFNYLNGSIPSGLHKFHASSFRGNLMLCGAPLKQCSSVSPNTTLSPLTVSERPSDLSNRKMSEGAKIAIVLGGVTLLFLPGLLVVFFCFKKKVGEQNVAPAEKGQKLKQDFGSGVQESEQNKLVFFEGCSYNFDLEDMLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLREVAMGKKEFEQQMEIVQRLDHHQNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTTETGRAPLDWDTRLKIMVGAARGIAHIHSANGRKLVHGNIKSSNVILSIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIESRKSTKKSDVYSFGVLLLEMLTGKTPVQYSGHDEVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAAMPDTRPSMEEVVKTIEEIRASIY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo