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Report for Sequence Feature Glyma09g40780

Feature Type:gene_model
Chromosome:Gm09
Start:45606535
stop:45610370
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g40780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01970AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:373014-374651 REVERSE LENGTH=351 SoyBaseE_val: 2.00E-107ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
UniRef100_I1L6W8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6W8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q84YE8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein-like protein n=1 Tax=Sorghum bicolor RepID=Q84YE8_SORBI SoyBaseE_val: 7.00E-60ISS

Expression Patterns of Glyma09g40780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40780
ParalogEvidenceComments
Glyma18g45020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g271300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g40780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g40780
>Glyma09g40780.1   sequence type=CDS   gene model=Glyma09g40780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACAGGAGAAGGCAAGGTATATCCAAGTCTTCCACCTTCAAGGAAGAATTTCATGATCCATCATTGGAAGATGACAATGCTTCTCCTTCAATCTTCTCATCTTCTTCAACACCACCACCATCATCTCTCGCTGCTCAAGCCATCAAAGCTGCTGCTTCTCGTCGTGAACCTTCTCTTTCCTTTGCTTTTGCCCCCGCCGAGTTTGACCATCAAAGATCCAAGAGCTTTGGGGCTTATGGAAATGGCAACTCCAAGTCTGGTGGTTTCTGGGGTGTGATTGCGCAGAAAGCCAAATCAATTCTGGATGATGATAAGCCAACCCCACAACATGACACCATGCCTCAAACCCAAACGCTCAAGTCACACTCATTTAATACCTTTTCAGATCCTTCTGCAGTTCAGAACTCCCCTTCACAATTCAAGCCTGGATATGAATCCCTTGACTCGAGTAGAAAAATGGACAATCCTAAATTTCGGAAGGGCTTGGATAAAATCACTTCGTCCCTCAATCAACTAGGTGACACTTTTGAGAAAGCTTTTGAGGAAGGCCGAACAATTGTGGGGAGTAAGACAGCAGATCTGAGAACTCAAATAAGGCGAAAAGGAAGTAACTTTGGGGACACAAACCAAACTTCAGATTTGAGAAATCCGTTTCAAGAAGCAGACCAGACACAGACTCAATCTAGCCATGAAACAAAACTCAAGGCATCACGCGACGTGGCAATGGCAACAGCTGCCAAAGCAAAATTACTTCTTCGCGAGCTAAAATCCGTTAAAGCAGATTTGGCTTTTGCTAAAGCAAGGTGTGCTCAACTTGAGGAAGAGAACAAAGTACTCCGGGACCGAGAGGGCAGCGATAAGGGACAGAACCGTGAAGATGATGATCTGATAAGGCATCAATTGGAGACACTTCTAGCTGAGAAGGCTCGTCTGGCAAGCGAGAATGAGAAATATTCTCGGGAAAACCGTTTCTTGAGGGAAATTGTGGAGTACCATCAGCTGACTATGCAGGATGTGGTGTATATAGATGAGGGCATGGAAGAAGTCAATGAAGTTTACCCTGTGGATGACAGTAGGATCACACGGTTACTATCTGTCTCTCCACACTCATCTGATGAGGATGTTCTGGTCTCACCAAGTCCACCTATGCTGTCAAAAGAAATATTTACTGTGCCGGAAGAAGATAGTAAGAGCATATCAAAAGATGGGGCTCCTTCTACTGTCTCAGTTTCTCCACATACAAAATGA
Predicted protein sequences of Glyma09g40780
>Glyma09g40780.1   sequence type=predicted peptide   gene model=Glyma09g40780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYRRRQGISKSSTFKEEFHDPSLEDDNASPSIFSSSSTPPPSSLAAQAIKAAASRREPSLSFAFAPAEFDHQRSKSFGAYGNGNSKSGGFWGVIAQKAKSILDDDKPTPQHDTMPQTQTLKSHSFNTFSDPSAVQNSPSQFKPGYESLDSSRKMDNPKFRKGLDKITSSLNQLGDTFEKAFEEGRTIVGSKTADLRTQIRRKGSNFGDTNQTSDLRNPFQEADQTQTQSSHETKLKASRDVAMATAAKAKLLLRELKSVKADLAFAKARCAQLEEENKVLRDREGSDKGQNREDDDLIRHQLETLLAEKARLASENEKYSRENRFLREIVEYHQLTMQDVVYIDEGMEEVNEVYPVDDSRITRLLSVSPHSSDEDVLVSPSPPMLSKEIFTVPEEDSKSISKDGAPSTVSVSPHTK*






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