Glyma09g40760 - SoyBase

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Report for Sequence Feature Glyma09g40760

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45593471
stop:	45598182
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01990	AT	Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein \| chr5:377373-379600 REVERSE LENGTH=431	SoyBase	E_val: 0	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0009672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity	SoyBase	N/A	ISS
KOG2722	KOG	Predicted membrane protein	JGI		ISS
PF03547	PFAM	Membrane transport protein	JGI		ISS
UniRef100_G7KY93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier component auxin transport protein n=1 Tax=Medicago truncatula RepID=G7KY93_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L6W5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6W5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40760

Paralog	Evidence	Comments
Glyma18g45050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g271100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40760

Limit To All Plant Sequences

>Glyma09g40760.2   sequence type=transcript   gene model=Glyma09g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTCATTAATTTGTGATGAAGAAGGACAAGTGTGTTAATTAAAGCTACATCATTTAAATTTGAAGGGCTGTTTCTGTTTGTTGATTTCGTGTCTCCAAAGGAGAGAGACAAGAAAAAAATAAATAAGAGAAGAACAAGGAACAGAACAGAATCATATTCTCTTATTCACGTGCTCTAGTTGAAGAAGGCATTCATACACCACTGACCCATAACATAATAAACCTCTTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGCCAAAGACGGTGCAAGGCCAAGATCTTCTTCAGCTCCTTCATAGGTGCATGAGATTGAATTGGTTTTTGGGCACCAAATAGCAATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAGAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATAAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGTTCCTTGGGACTCCTTATGGCTTCCAACTGGTCTTTACACTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACTTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTCCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATCGTCCGTCCCCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATGTATCATTTGGCCAGTGGGTCGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCGCCTCCTCCAGAAGGCACATTTGAGATTGATAATGAAAGTGTTCCCTTGAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAATGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTATATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCCCCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGTCCACTGTTCTTCTTTACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTGGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAGCTTGGTTTTCGGACAACTGCTGCTATTATTTTTGCACGGTTACTTTTAGTGCCTCTGGTTGGACTTGGGATTGTCACGTTGGCTGACAAGCTTGGTTTTCTTCCCTCTGATGACAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGGAGGAATGCAGCTGCTGTATTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGAGACTGTATAGAGAAATTTGATCCAATTCATTTTGTTCATTTTGATGATAGATTAGTAGAGAAACCCCAATATTTTTATACAAAATGCCTTTATATGATGATCACGATCAAAATGTCTGCTGCCTACTGAATTATGTTAGTCTATTAACTATTCCAAATTGGGTTGGTGAACACATTCACCAGCAATATACTGGAATATTTTTTTCAATGCATTATTAGGATGTACGAGAGAAATCATCAATCATTATATTCACATGCCACGCTTGAATAGGTTACA

Coding sequences of Glyma09g40760

Limit To All Plant Sequences

>Glyma09g40760.1   sequence type=CDS   gene model=Glyma09g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGGTGGAGAGGATCCTGTTGGCCCTGCAGAATGAGGGTGCAGGAGGAGAATCCTTGTTGGGGTCAATAAAAATTGCTGTGATGCCCATAGTTAAAGTGTTCACCATGTGTTCCTTGGGACTCCTTATGGCTTCCAAGTATGTTAACATCTTGCCTGCTTCTGGAAGAAAGCTTTTGAATGGGCTGGTCTTTACACTCTTGCTACCTTGCTTGATTTTCTCCCAATTGGGACAAGCTGTTACTTTGGAGAAGATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTCCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATCGTCCGTCCCCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATGTATCATTTGGCCAGTGGGTCGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCGCCTCCTCCAGAAGGCACATTTGAGATTGATAATGAAAGTGTTCCCTTGAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAATGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTATATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCCCCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGTCCACTGTTCTTCTTTACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTGGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAGCTTGGTTTTCGGACAACTGCTGCTATTATTTTTGCACGGTTACTTTTAGTGCCTCTGGTTGGACTTGGGATTGTCACGTTGGCTGACAAGCTTGGTTTTCTTCCCTCTGATGACAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGGAGGAATGCAGCTGCTGTATTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGA

>Glyma09g40760.2   sequence type=CDS   gene model=Glyma09g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGCTTGGTGGTTTATTCCTATGAATGTTGTCCTGAGTTCCATAGCAGGCTCACTCATTGGTTTTGTTGTTGCCACGATCGTCCGTCCCCCATACCCTTTCTTTAAGTTTACAATTGTACAGATTGGAATCGGGAATATTGGGAATGTTCCACTTGTCCTGATTTCTGCTTTGTGTCGAGACCAATCCAATCCCTTTGGAGACATGGAAAAATGCAGCACAGATGGAACTGCCTATGTATCATTTGGCCAGTGGGTCGGTGCTATCATCCTATATACATATGTATTTCAAATGTTGGCGCCTCCTCCAGAAGGCACATTTGAGATTGATAATGAAAGTGTTCCCTTGAAGAGCACTCCAATGAGTGATGCTACACCTGAACAAGCTCCATTGCTCGCTAATGAGGAGGGGGTCACTTCAACAGCTCAAAATAAGAAGTGGGAGATTAAAGACGTCTTGGCATTCCTATATGAGAAATTGAAGCTTAAGCAAATTCTTCAACCCCCTATCATTGCATCAATCCTTGCCATGACACTAGGGGCAATCCCATTTCTCAAGAAACTGATCTTTACACCTGATGGTCCACTGTTCTTCTTTACAGACAGCTGCATGATTCTTGGGGAGGCCATGATTCCTTGCATTCTGTTGGCACTGGGAGGCAACCTTATTGATGGACCTGGAAGTTCAAAGCTTGGTTTTCGGACAACTGCTGCTATTATTTTTGCACGGTTACTTTTAGTGCCTCTGGTTGGACTTGGGATTGTCACGTTGGCTGACAAGCTTGGTTTTCTTCCCTCTGATGACAAGATGTTTCGATTTGTCCTCCTCCTTCAGCATTCAATGCCAACATCCGTCCTTGCAGGTGCTGTTGCTAATTTAAGAGGTTGTGGGAGGAATGCAGCTGCTGTATTGTTTTGGGTTCATATTTTTGCTATATTCTCAATGGCAGGATGGATTATTCTATATCTAAACATACTCTTCTGA

Predicted protein sequences of Glyma09g40760

Limit To All Plant Sequences

>Glyma09g40760.1   sequence type=predicted peptide   gene model=Glyma09g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVERILLALQNEGAGGESLLGSIKIAVMPIVKVFTMCSLGLLMASKYVNILPASGRKLLNGLVFTLLLPCLIFSQLGQAVTLEKMLAWWFIPMNVVLSSIAGSLIGFVVATIVRPPYPFFKFTIVQIGIGNIGNVPLVLISALCRDQSNPFGDMEKCSTDGTAYVSFGQWVGAIILYTYVFQMLAPPPEGTFEIDNESVPLKSTPMSDATPEQAPLLANEEGVTSTAQNKKWEIKDVLAFLYEKLKLKQILQPPIIASILAMTLGAIPFLKKLIFTPDGPLFFFTDSCMILGEAMIPCILLALGGNLIDGPGSSKLGFRTTAAIIFARLLLVPLVGLGIVTLADKLGFLPSDDKMFRFVLLLQHSMPTSVLAGAVANLRGCGRNAAAVLFWVHIFAIFSMAGWIILYLNILF*

>Glyma09g40760.2   sequence type=predicted peptide   gene model=Glyma09g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAWWFIPMNVVLSSIAGSLIGFVVATIVRPPYPFFKFTIVQIGIGNIGNVPLVLISALCRDQSNPFGDMEKCSTDGTAYVSFGQWVGAIILYTYVFQMLAPPPEGTFEIDNESVPLKSTPMSDATPEQAPLLANEEGVTSTAQNKKWEIKDVLAFLYEKLKLKQILQPPIIASILAMTLGAIPFLKKLIFTPDGPLFFFTDSCMILGEAMIPCILLALGGNLIDGPGSSKLGFRTTAAIIFARLLLVPLVGLGIVTLADKLGFLPSDDKMFRFVLLLQHSMPTSVLAGAVANLRGCGRNAAAVLFWVHIFAIFSMAGWIILYLNILF*

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