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Report for Sequence Feature Glyma09g40690

Feature Type:gene_model
Chromosome:Gm09
Start:45547315
stop:45552821
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g40690
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09780AT Annotation by Michelle Graham. TAIR10: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | chr1:3165550-3167812 REVERSE LENGTH=557 SoyBaseE_val: 0ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0052541GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process SoyBaseN/AISS
GO:0052546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005740GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004619GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate mutase activity SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
GO:0046537GO-mf Annotation by Michelle Graham. GO Molecular Function: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG4513 KOG Phosphoglycerate mutase JGI ISS
PF01676PFAM Metalloenzyme superfamily JGI ISS
PF06415PFAM BPG-independent PGAM N-terminus (iPGM N) JGI ISS
UniRef100_B7FLD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=2 Tax=Medicago truncatula RepID=B7FLD9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L6W0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6W0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g40690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40690
ParalogEvidenceComments
Glyma18g45121 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40690 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g270500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g40690
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g40690
>Glyma09g40690.1   sequence type=CDS   gene model=Glyma09g40690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCACAGGTTTCTCATGGAAATTGGCGGATCATCCAAAGCTTCCAAAGGGTAAGACTGTGGCTGTGGTGGTGTTGGATGGTTGGGGAGAGGCCACACCCAATGAGTACAACTGCATCCACAAGGCTGAAACACCCTGCATGGATTCTCTTAAAAAGGGTGCCCCTGAACGGTGGAGATTGGTTAGGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGTCGCATATTTGCTCAGGGTGCTAAGCTTGTCGACCTAGCTCTAGCCTCTGGAAAATTTTTTGAAGGAGGAGGTTTCAAGTACATAAAGGAAAGTTTTGAAAATGGCACATTGCATCTCATTGGGTTACTGAGTGATGGTGGAGTTCACTCCAGACTTGATCAGTTGCAGTTGTTGCTTAAAGGAGTTAGCGAGCGAGGTGTTAAAAGAGTCCGTGTCCATATTCTTACAGATGGCCGTGATGTTTTGGATGGTTCAAGTGTGGGGTTTGTGGAAACCCTAGAAAATGATCTTGCAAACTTGCGTGAGAAAGGTGTTGATGCTAGGATAGCATCAGGTGGAGGTCGTATGAATGTCACAATGGATCGTTATGAGAATGACTGGAATGTTGTGAAACGAGGGTGGGATGCTCAAGTTCTTGGTGAAGCCCCTTATAAGTTTACAAATGCTCTTGAAGCTGTCAAGAAGCTGAGGGCAGAACCAAAGGCCAATGATCAGTATCTGCCTCCTTTTGTTATTGTTGACGAGAGTGGGAAACCTGTTGGTCCGATAGTTGATGGAGATGCTGTTGTTACATTCAACTTCCGAGCTGATCGTATGACAATGATTGCTAAAGCTCTTGAATATGAAAATTTTGACAAATTTGATAGAGTTCGTTTCCCAAAAATCCGCTATGCTGGAATGCTTGAATATGATGGTGAATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGTGAGACTGTTAAATTTGGTCACGTCACATTCTTCTGGAATGGAAACCGCTCTGGGTATTTTAATTCAGAATTGGAGGAGTATGTGGAAATTCCCAGTGACTCTGGGATTACATTCAATGAACAACCATTAATGAAAGCATTGCAGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAGATGATTCTTGATGCAATAGAGCAAGTGGGTGGAATTTATGTTGTCACCGCTGACCATGGGAATGCAGAGGATATGGTCAAGAGGGATAAATCTGGAAAACCACTTCTAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGAAATGATGTTCCAACCGGCGGGCTTGCCAACGTTGCTGCAACTGTGATGAATCTTCATGGATTCGAGGCTCCCAGCGACTATGAGACAACTCTCGTAGAAGTGGTTGATAACTAG
Predicted protein sequences of Glyma09g40690
>Glyma09g40690.1   sequence type=predicted peptide   gene model=Glyma09g40690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSTGFSWKLADHPKLPKGKTVAVVVLDGWGEATPNEYNCIHKAETPCMDSLKKGAPERWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKFFEGGGFKYIKESFENGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGVKRVRVHILTDGRDVLDGSSVGFVETLENDLANLREKGVDARIASGGGRMNVTMDRYENDWNVVKRGWDAQVLGEAPYKFTNALEAVKKLRAEPKANDQYLPPFVIVDESGKPVGPIVDGDAVVTFNFRADRMTMIAKALEYENFDKFDRVRFPKIRYAGMLEYDGELKLPSHYLVSPPEIDRTSGEYLVYNGIRTFACSETVKFGHVTFFWNGNRSGYFNSELEEYVEIPSDSGITFNEQPLMKALQIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACKAADAAVKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPLLGKDGKIQILTSHTLEPVPIAIGGPGLAPGVRFRNDVPTGGLANVAATVMNLHGFEAPSDYETTLVEVVDN*






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