Glyma09g40681 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma09g40681): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma09g40681): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma09g40681

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45537955
stop:	45542564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40681

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23320	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 24 \| chr4:12189182-12191977 REVERSE LENGTH=437	SoyBase	E_val: 1.00E-26	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009814	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF430	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
UniRef100_G7KMF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7KMF5_MEDTR	SoyBase	E_val: 2.00E-39	ISS
UniRef100_I1N3D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3D8_SOYBN	SoyBase	E_val: 2.00E-51	ISS

Expression Patterns of Glyma09g40681

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g40681 not represented in the dataset	Glyma09g40681 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g40681 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g270400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40681

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40681

Limit To All Plant Sequences

>Glyma09g40681.2   sequence type=transcript   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCAATGAAAAATACAATTACCTTCCTCTATTCTTCTTTTCTGGAGGCACTGGTCCTCCAAACCAGCTTTTTCCTTTTGCTTCCCTATCAAACATCTCCTTCTTACGTCTCTTATCTTTTTGCTCTAAAGTCGCATAAAACTCAAGCGCCCCTGCATTTGTGGACACGAAACAAAGCAAAGAAAGAGAGACTGTGGTTATGCTTCTCGCTCTTAAAGGCTCTCTCCTCTTTCTCTCTCTACATCGGTTAGTTAAGGCTTGGAGATAGATTCTTCTATGGTGATCGAGGTTGAATAACTTCCTGCTTCTGAAGTTTCAGCTTCTCATCGAATCGAAGGGTAAAGCTGGATATAGTAAGATGCTTGTTGGTTGAATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAGGATTTTATCTGGACGAACAAGAAAAAAATACTTATTTATATGCCAAATAGGAATTCGGACTATTTCTTATTTGGTTTGATGCCTTTGATCTCTCTTGAATTTTTTTTTTTTTACTTTAATATTCATAGACTATGTATTTATGACATTTAATGTATTAATTACATATAAACAAATTTAAGTGATTGATTACAAAACAT

>Glyma09g40681.3   sequence type=transcript   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCAAACTTACATGTATAATGTTTGTCCAGTAAAAATTACACATATGTATGATGAAATTCAAATCTACTTTTTTCTTTTTAATTCTCTTTCTTTGTTGGATCCGGCGATCCCAACCACTCAATCTCCATGACCATGGCCTCTCTTCCTTCTCTCCCTCACCAAACCATGCCTTCATCTCCATGGCCTCCCTCCTCCTTGTAGCCATTCACTCCAAAAAATAGGTAATTCTGGTGTGGAAATCAAAATGTTATGAAAATTGAAACTAGGGCAACCATGGAAAACGATGGTGGGGAGAGTTCGAGTTCGTGGTCAATATCATCGAAAACAAAGCCAAAGAGGTTTACAACTTCCATTCTTTAGGTAAAGCTGGATATAGTAAGATGCTTGTTGGTTGAATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAGGATTTTATCTGGACGAACAAGAAAAAAATACTTATTTATATGCCAAATAGGAATTCGGACTATTTCTTATTTGGTTTGATGCCTTTGATCTCTCTTGAATTTTTTTTTTTTTACTTTAATATTCATAGACTATGTATTTATGACATTTAATGTATTAATTACATATAAACAAATTTAAGTGATTGATTACAAAACAT

>Glyma09g40681.4   sequence type=transcript   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCCTTTAATGAATATTATCGTCTTTGTTTGGGTAAAGCTGGATATAGTAAGATGCTTGTTGGTTGAATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAGGATTTTATCTGGACGAACAAGAAAAAAATACTTATTTATATGCCAAATAGGAATTCGGACTATTTCTTATTTGGTTTGATGCCTTTGATCTCTCTTGAATTTTTTTTTTTTTACTTTAATATTCATAGACTATGTATTTATGACATTTAATGTATTAATTACATATAAACAAATTTAAGTGATTGATTACAAAACAT

Coding sequences of Glyma09g40681

Limit To All Plant Sequences

>Glyma09g40681.1   sequence type=CDS   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAG

>Glyma09g40681.2   sequence type=CDS   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAG

>Glyma09g40681.3   sequence type=CDS   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAG

>Glyma09g40681.4   sequence type=CDS   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACATCCCCTATCAGTAGAATGATAACCAAACACTGTATATTCTTTTGCTCAATGCACACGGATCTATCAACCAATACTTGCATTGGGTGCCTAAATGATGAGATTACAATTCCATGGTCCAGTTTGGGAAGCTTAGGTGGACGAGTTTTGTATCCTAGCTGTATTCTCCGCTTTGAATTCTTCCCGTTTCACGATCTCATGATGTCCACCACCATCATTATTATCATCAGCGGTCACCACCACCATCAGTTGGACGTGAAAAGCTCCACAACTGAGTCATTGCAATTAAGTTTAGCAATAATTGAAGCAGCGACAGACAACTTTTCACACGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGATATTCTTATTGATGGGAGACCTATAGCTGTAAAGAGGCTCTCAAGAAATTCCAAGCAAGGTGTAGAGGAGTTAAAAGATGATGTTCTGCTAACAGGCGAGCTTCGACATAGAAATCTAATGATATTTATAGTATAG

Predicted protein sequences of Glyma09g40681

Limit To All Plant Sequences

>Glyma09g40681.1   sequence type=predicted peptide   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITSPISRMITKHCIFFCSMHTDLSTNTCIGCLNDEITIPWSSLGSLGGRVLYPSCILRFEFFPFHDLMMSTTIIIIISGHHHHQLDVKSSTTESLQLSLAIIEAATDNFSHENKIGKGGFGEVYKDILIDGRPIAVKRLSRNSKQGVEELKDDVLLTGELRHRNLMIFIV*

>Glyma09g40681.2   sequence type=predicted peptide   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITSPISRMITKHCIFFCSMHTDLSTNTCIGCLNDEITIPWSSLGSLGGRVLYPSCILRFEFFPFHDLMMSTTIIIIISGHHHHQLDVKSSTTESLQLSLAIIEAATDNFSHENKIGKGGFGEVYKDILIDGRPIAVKRLSRNSKQGVEELKDDVLLTGELRHRNLMIFIV*

>Glyma09g40681.3   sequence type=predicted peptide   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITSPISRMITKHCIFFCSMHTDLSTNTCIGCLNDEITIPWSSLGSLGGRVLYPSCILRFEFFPFHDLMMSTTIIIIISGHHHHQLDVKSSTTESLQLSLAIIEAATDNFSHENKIGKGGFGEVYKDILIDGRPIAVKRLSRNSKQGVEELKDDVLLTGELRHRNLMIFIV*

>Glyma09g40681.4   sequence type=predicted peptide   gene model=Glyma09g40681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITSPISRMITKHCIFFCSMHTDLSTNTCIGCLNDEITIPWSSLGSLGGRVLYPSCILRFEFFPFHDLMMSTTIIIIISGHHHHQLDVKSSTTESLQLSLAIIEAATDNFSHENKIGKGGFGEVYKDILIDGRPIAVKRLSRNSKQGVEELKDDVLLTGELRHRNLMIFIV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain