Glyma09g40640 - SoyBase

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Report for Sequence Feature Glyma09g40640

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45518561
stop:	45526332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38670	AT	Annotation by Michelle Graham. TAIR10: phosphorylethanolamine cytidylyltransferase 1 \| chr2:16168979-16171680 FORWARD LENGTH=421	SoyBase	E_val: 0	ISS
GO:0006646	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylethanolamine biosynthetic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0031307	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to mitochondrial outer membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004306	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ethanolamine-phosphate cytidylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG2803	KOG	Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase	JGI		ISS
PTHR10739	Panther	CHOLINEPHOSPHATE CYTIDYLYLTRANSFERASE	JGI		ISS
PTHR10739:SF14	Panther	ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE	JGI		ISS
PF01467	PFAM	Cytidylyltransferase	JGI		ISS
UniRef100_G7KZ97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethanolamine-phosphate cytidylyltransferase n=2 Tax=Medicago truncatula RepID=G7KZ97_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFC9 related cluster n=1 Tax=unknown RepID=UPI000233DFC9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40640

Paralog	Evidence	Comments
Glyma18g45210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g270100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g40640

Limit To All Plant Sequences

>Glyma09g40640.2   sequence type=CDS   gene model=Glyma09g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGTTACGAGGCGGTGACGGAGACGAAGTGGGTGGTGACGTGCATGGTGGGAGGGGTGATCGTGGGGGTGTCACTGCTGGGTGCGTATTCGAGCCAGCTCTGGAAGAGCCGAAGACGCAACAAGAAGCCCGTTCGCGTCTACATGGACGGCTGCTTCGATATGATGCATTATGGCCATTGCAATGCCCTTCGCCAAGCTCGTGCCCTCGGTGACCAGCTCATTGTTGGGGTTGTTAGTGATGCAGAGATCATTGCCAATAAGGGTCCCCCCGTTACCCCTCTTCACGAAAGGTTGGTAATGGTGAATGCGGTGAAGTGGGTGGATGAGGTTATTCCTGAAGCTCCCTATGCGATAACTGAGGAGTTCATGAAGAAGCTTTTTGATGAGTACAAGATAGATTTCATTATTCATGGGGATGACCCTTGTGTTCTTCCGGATGGAACTGATGCTTATGCTCACGCTAAGAAAGCTGGTCGATATAAGCAGATAAAGCGCACTGAAGGGGTTTCCAGCACTGATATTGTTGGTCGCATGCTTCTCTGTGTAAGAGAAAGGTCTATTGCTGAAAAAAATCATAATCATTCTTCTTTACAAAGACAGTTCAGCAATGGCCATAGTCCAAAGTTTGAAGCTGGTGTGTCTGCTGCAACTGCAAGTGGAACTCGTATATCTCATTTTCTGCCTACATCTCGTAGAATTGTTCAGTTCTCAAATGGGAGGGGTCCAGGACCTGATTCTCACATTGTATATATAGATGGTGCATTTGATCTCTTTCATGCTGGACATGTCGAGATCTTGAGGCTTGCTAGGGATCTTGGAGATTTTCTACTTGTTGGAATACACACAGATCAGACAGTCAGTGCAACTAGAGGATCACATCGTCCTATCATGAATCTTCATGAAAGAAGTCTAAGTGTTTTAGCATGTCGCTATGTGGATGAAGTTATAATTGGTGCACCATGGGAGATTTCCAAAGATATGCTCACTACATTTAACATCTCGTTAGTTGTTCATGGAACCATTGCAGAAAGTAATGATTTTAAGAAGGAAGAATGCAATCCATATGCTGTTCCTATTAGCATGGGCATCTTCAAAGTTTTAGAAAGTACTTTAGATATAACAACTACTACAATAATTAGAAGGATTGTTTCTAATCACGAGGCATACCAGAACAGAAATAAGAAGAAGGATGAAAGTGAGAAAAGATACTATGAGGGCAAGAGTCACGTGTCCGAAGAATAA

Predicted protein sequences of Glyma09g40640

Limit To All Plant Sequences

>Glyma09g40640.2   sequence type=predicted peptide   gene model=Glyma09g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSYEAVTETKWVVTCMVGGVIVGVSLLGAYSSQLWKSRRRNKKPVRVYMDGCFDMMHYGHCNALRQARALGDQLIVGVVSDAEIIANKGPPVTPLHERLVMVNAVKWVDEVIPEAPYAITEEFMKKLFDEYKIDFIIHGDDPCVLPDGTDAYAHAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSIAEKNHNHSSLQRQFSNGHSPKFEAGVSAATASGTRISHFLPTSRRIVQFSNGRGPGPDSHIVYIDGAFDLFHAGHVEILRLARDLGDFLLVGIHTDQTVSATRGSHRPIMNLHERSLSVLACRYVDEVIIGAPWEISKDMLTTFNISLVVHGTIAESNDFKKEECNPYAVPISMGIFKVLESTLDITTTTIIRRIVSNHEAYQNRNKKKDESEKRYYEGKSHVSEE*

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