Glyma09g40620 - SoyBase

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Report for Sequence Feature Glyma09g40620

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45506425
stop:	45510549
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54220	AT	Annotation by Michelle Graham. TAIR10: GRAS family transcription factor \| chr3:20070550-20072625 FORWARD LENGTH=653	SoyBase	E_val: 0	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009956	GO-bp	Annotation by Michelle Graham. GO Biological Process: radial pattern formation	SoyBase	N/A	ISS
GO:0051457	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of protein location in nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_Q9AVK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein SCARECROW n=1 Tax=Pisum sativum RepID=SCR_PEA	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338B90	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B90 related cluster n=1 Tax=unknown RepID=UPI0002338B90	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40620

Paralog	Evidence	Comments
Glyma18g45220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g270000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g40620

Limit To All Plant Sequences

>Glyma09g40620.2   sequence type=CDS   gene model=Glyma09g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTGTGCTTTGTTCAGTGGTGGCGGTAACATTACCGAAGATGGCAATGTTAATGGAAGTGGAAGTGCTAATAGCACTCCTTTGACAAGTGCCTCTAACTCTAGCAACATGAGCAACGAAGAACAACAACAACTACATGCTGGTGGCATCATGCCACAGCCTTATTGTGAGAGAAAAATGATGAGGAAAAGAATGGCTTCTGAGATGGAAGTTAACGTTCACGCCACTCCACCACACAACTCTTCCTCCACAACAAGTGATTATCCTAGGTTTCCTCGTCGAAGCAACACCAACACGAACATGTTAGAAAAAGGGTCCCCCACAACAACATCATCAACAACAACGTTAGCCGCAGGTACATGTAATAATAATAATAATAATAATAATAATAATAATAGCCATCATTATAATAATAGTAACAATAGTAATAGTGGTAATATTTCATCAAGAGATAACGTTGCTATTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCCTCAATTCCTCTGGTGTTGCTCCAAACTACAACAGCACTCATCAACACCATCACTTCCAAGGACTCGTTGAAAGCCAGGACCAGCAAAACTCCGTGCCTGCAGTTTGTGGATTCTCAGGTTTACCACTTTTTCCATCTCAAAGCCAAAGAAACCGAGACAACATAAGAAACAGTGGTGGAAACATTGTTGACGTGGTTGCTTCCTCTTCTCCTTCTCCTTCCATGGACGACACTTCAGGAGCAGCAACGACAAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCCAACAGTGTTTCGATTCCTCAACTAATCAGCAACGTGAGGGAGATCATATACCCTTGCAACCCAAACCTCGCAATGGTTCTTGAATACAGGCTTCGCCTTCTTCTCACCGAGTCTACCACCCCGCAACACAAAAGAGGCACAGAAGGGGTGCCTCTTCTTCCTTCTGTTTCCTCAGTGAAGCTCATGAATAACCGTGTTGTGGATGGCATTGCTCCTAATTTGCACTTCACAGATGCTTCAGGTGGTGCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCAAATCACTCCTCACCATGATAACACCAACACCAACACCAACACCAACAATAACAACAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCAGCACCTCCACCTCATTACTCACCACCAGAAGAGAAGAACCCTCAAGAAGAAGATCTAGCAGCAGCAACCACCACTGCTCATGAGGTGGCACTTTCAAGAAAGAAGAAAGAGGAGCTGCGTGAACAGAAGAAGAAAGACGAAGAGGGTCTGCATCTCCTCACTCTTCTGCTTCAGTGTGCAGAAGCGGTTTCAGCTGAGAATCTAGAAGATGCCAACAAGATGCTTCTGGAGATTTCTCAGTTATCAACACCGTTCGGCACTTCAGCACAGCGTGTGGCAGCATATTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTCTAGGGATATACGCCACTTTGCCACACACACACCAAAGCCACAAGGTAGCTTCAGCTTTTCAAGTGTTCAATGGTATTAGTCCTTTCGTGAAGTTCTCACACTTCACAGCAAACCAAGCAATTCAAGAAGCCTTCGAAAGAGAAGAGAGGGTGCACATCATAGATCTTGATATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGAGCACCTTATGTGAGGCTCACGGGGCTTGGTACCTCTATGGAAGCACTTGAAGCCACGGGAAAACGTTTGTCTGATTTTGCAAACAAACTTTGCCTTCCCTTTGAGTTCTTCCCTGTTGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTAGCAAAACAGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAAAGACTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTAAGCAATACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGACTCTCTTGGGTCAAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAACTATTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAACCAAAGTTTCACAATTGGAGGGAAAAGCTTCAACAGTGTGGTTTTAGAGGCATATCTCTAGCTGGTAATGCTGCCACACAAGCTAGTCTACTCCTTGGTATGTTCCCATCTGAGGGTTATACCTTGGTGGAGGACAATGGCATTCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCTTTCCATGGTGCCATTACCCACCACAACTAG

Predicted protein sequences of Glyma09g40620

Limit To All Plant Sequences

>Glyma09g40620.2   sequence type=predicted peptide   gene model=Glyma09g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAACALFSGGGNITEDGNVNGSGSANSTPLTSASNSSNMSNEEQQQLHAGGIMPQPYCERKMMRKRMASEMEVNVHATPPHNSSSTTSDYPRFPRRSNTNTNMLEKGSPTTTSSTTTLAAGTCNNNNNNNNNNNSHHYNNSNNSNSGNISSRDNVAIPNYPTVTVTTNYSTMLLPSSLNSSGVAPNYNSTHQHHHFQGLVESQDQQNSVPAVCGFSGLPLFPSQSQRNRDNIRNSGGNIVDVVASSSPSPSMDDTSGAATTSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAMVLEYRLRLLLTESTTPQHKRGTEGVPLLPSVSSVKLMNNRVVDGIAPNLHFTDASGGAVVVNQHMLSNWGVPQITPHHDNTNTNTNTNNNNNPSVSLVTLPSPAPPPHYSPPEEKNPQEEDLAAATTTAHEVALSRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLCLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHGAITHHN*

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