Report for Sequence Feature Glyma09g40610
Feature Type: gene_model
Chromosome: Gm09
Start: 45496570
stop: 45505010
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g40610
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G38650 AT
Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 7 | chr2:16161856-16165523 REVERSE LENGTH=619
SoyBase E_val: 0 ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0016051 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
GO:0047262 GO-mf
Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity
SoyBase N/A ISS
PTHR13778 Panther
GLYCOSYL TRANSFERASE-RELATED
JGI ISS
PTHR13778:SF2 Panther
GLYCOSYL TRANSFERASE-RELATED
JGI ISS
PF01501 PFAM
Glycosyl transferase family 8
JGI ISS
UniRef100_A2Q3W2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glycosyl transferase, family 8 n=1 Tax=Medicago truncatula RepID=A2Q3W2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338D4C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338D4C related cluster n=1 Tax=unknown RepID=UPI0002338D4C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g40610
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g40610
Paralog Evidence Comments
Glyma18g45226 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g40610 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g269900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g40610
Coding sequences of Glyma09g40610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g40610.2 sequence type=CDS gene model=Glyma09g40610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAGCGGTGGTGGTGGTGGTGGTGGTATGGGCGCGCTTCCGTCGTACGGCGTCCCGGCGAAAAGGCGGTGGAAAGGGCTCGTAGTTGCGGTGCTCGGTCTCGTCATTCTCTCCATGCTCGTCCCTCTCGTCTTCCTGCTCGGTCTCCACAACGGTTTCCACTCTTCCGGATATATATATGAACAGAAGAGTACTCCTTCGAATGAGAAAAGTCTTGAAAGATATGATAGACATGATGTTGGCCATAATGAGTCTGAGGAAGGACAATCAAATCATGTGGAGGATCTTATCACAAAGTTTGAACCAACTCTTCCAAAGGATGCTCTCAAGAAATATGCTCGAGAAGGCAAGAATGATTCCAACAATAAGGCTGGCAAAGATGATAAACAAAGAGGTTCTAAGGCGCCACCTAAGGGTGTTCTGCAATCACGTCCAACTTCAAATAATCCTAGAAGTGGTCAAGTTGAACAAGTCAACCGCCCTAAAACAAGCACTGCCGATGAAGGTGGAAAGTCATGTGAGCTCACATTTGGTAGCTATTGCCTTTGGCAACAAGAACATAGACAAGAAATGAAAGATGCTCTGGTTAAGAAATTGAAAGACCAACTATTTGTTGCTAGAGCTTATTATCCTAGCCTTGCAAAACTCCCAGCAAACGATAAATTGTCTCGCCAACTGAAACAGAATATACAGGAGATGGAGCACATGCTTAGTGAATCTACCACAGATGCTGATCTTCCACCAGCGGCTGGGAGTTATTCAAAAAAGATGGAAAATACAATAACCAAAGTAAAATCAATCCCTGTGGTTTGCGACAATGTGGACAAGAAATTGAGACAAATATTTGATTTGACTGAGGATGAAGCCAACTTCCACATGAAACAGAGTGCATTCTTATATAAACTTAATGTTCAGACAATGCCAAAGAGTCATCACTGCCTGTCACTGAAACTAACTGTAGAATATTTCAAATCCTCGCATTATGACGAAAAGGCTGATGAAGAAAAGTTTATTGATTCTTCATTGCACCATTATGTTATTTTCTCTAATAATGTGCTTGCAGCTTCAGTAGTCATCAACTCCACCGTATTTCATGCAAAAGAAAGTTCAAATCAGGTTTTTCATGTTTTGACTGATGGAGAAAATTATTATGCAATGAAGCTCTGGTTCTTGAGAAACCATTATAAGGAAGCTGCTGTTCAAGTGCTGAATGTTGAGCTGGACATCCAAAAGGAAAATCCGTTGCTTCTATCCTTGCCTGAGGAGTTCCGTGTTTCAATTCTCAGTTATGATAATCCATCCACAAACCAGATTAGAACGGAGTTCCTTTCAATTTTTTCTGATTCACACTATTTACTTCCTGATTTATTCAGCAATTTGAATAAAGTTGTGGTTCTGGATGATGATGTTGTTATCCAACAAGACTTATCTGCCCTGTGGAACACAGACTTGGGAGATAAAGTGAACGGTGCAGTGCAGTTCTGCTCGGTAAAGCTGGGTCAACTGAAAAGTTATCTGGGTGAGAAAGGTCTCAGTCAGAATTCCTGTGCTTGGATGTCAGGGTTGAACATAATTGACCTGGTGAGGTGGAGAGAGCTTGGTCTTACTCAAACTTACAGAAAGTTGATAAAAGAGTTTACAATGCAAGAAGGATCTGTGGAGGGTATTGCATGGCGGGCAAGCTTGCTCACCTTTGAGAATGAAATATATCCACTCAATGAGTCGTGGGTTGTGTCTGGACTGGGTCATGATTATAAAATTGATACTCAGCCCATTAAGACAGCTTCGGTGCTACACTACAATGGGAAAATGAAACCTTGGCTTGATCTGGGAATTCCACAGTATAAAAGCTATTGGAAGAAGTTTCTGAACAAAGAGGATCAGCTCTTAAGTGATTGCAATGTAAATTCATAA
Predicted protein sequences of Glyma09g40610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g40610.2 sequence type=predicted peptide gene model=Glyma09g40610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKSGGGGGGGMGALPSYGVPAKRRWKGLVVAVLGLVILSMLVPLVFLLGLHNGFHSSGYIYEQKSTPSNEKSLERYDRHDVGHNESEEGQSNHVEDLITKFEPTLPKDALKKYAREGKNDSNNKAGKDDKQRGSKAPPKGVLQSRPTSNNPRSGQVEQVNRPKTSTADEGGKSCELTFGSYCLWQQEHRQEMKDALVKKLKDQLFVARAYYPSLAKLPANDKLSRQLKQNIQEMEHMLSESTTDADLPPAAGSYSKKMENTITKVKSIPVVCDNVDKKLRQIFDLTEDEANFHMKQSAFLYKLNVQTMPKSHHCLSLKLTVEYFKSSHYDEKADEEKFIDSSLHHYVIFSNNVLAASVVINSTVFHAKESSNQVFHVLTDGENYYAMKLWFLRNHYKEAAVQVLNVELDIQKENPLLLSLPEEFRVSILSYDNPSTNQIRTEFLSIFSDSHYLLPDLFSNLNKVVVLDDDVVIQQDLSALWNTDLGDKVNGAVQFCSVKLGQLKSYLGEKGLSQNSCAWMSGLNIIDLVRWRELGLTQTYRKLIKEFTMQEGSVEGIAWRASLLTFENEIYPLNESWVVSGLGHDYKIDTQPIKTASVLHYNGKMKPWLDLGIPQYKSYWKKFLNKEDQLLSDCNVNS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
