Report for Sequence Feature Glyma09g40600
Feature Type: gene_model
Chromosome: Gm09
Start: 45488745
stop: 45493973
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g40600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G60800 AT
Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein | chr3:22467486-22469273 REVERSE LENGTH=307
SoyBase E_val: 2.00E-177 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1315
KOG
Predicted DHHC-type Zn-finger protein
JGI ISS
PTHR22883 Panther
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
JGI ISS
PF01529 PFAM
DHHC zinc finger domain
JGI ISS
UniRef100_B9RDC5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RDC5_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1L6V6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6V6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g40600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g40600
Paralog Evidence Comments
Glyma18g45240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g40600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g269800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g40600
Coding sequences of Glyma09g40600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g40600.1 sequence type=CDS gene model=Glyma09g40600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATAGATCTGGAGCAGGCATGGCTTGGAACGTGTTTAGGTTCTGCACTGCCCTGAGAGGATTAGGCTCGATCATGATACTAATGGTTCTTGGGGTTGTGGGTGTTACCTATTACGCTGTTGTGTTGACTAATTTTGGACCTGCCTTGTTTCTTGGAGGCCTTGATACTCTTATCTCCTTCGTGGTGTTGATCTTGTTTCATTGTTTGTTGGTTATGTTATTGTGGTGTTACTTTGCTGTTGTGTTTATGGATCCGGGGACTGTGCCTCCTAACTGGAAGCCTGCTGCTGATGAGGAGAGAGGAGAGGTTGATCCGTTGAATGGGGTAGAATTAAGTAATCTGCAGTCTGATCCTGCAAATCAACGGTTCAGATACTGTCGGAAGTGCAGTCAGCCCAAGCCACCTCGATGTCATCATTGTTCTGTTTGTGGACGTTGTGTACTGAAGATGGACCACCATTGTGTCTGGGTAGTTAACTGTGTTGGGGCATTAAATTACAAGTATTTCCTCCTTTTCTTGGTCTACACTTTCCTTGAGACCACTCTTGTGACTATATCATTACTGCCACATTTCAAAACATACTTTTCTGACGGAGAAATTCCTGGAACACCTGGCACTCTTGCCACAACTTTTCTTACTTTTGTTTTGAATCTGGCCTTTTCCTTGAGTGTCTTGGGATTTCTTGTCTTGCACGTGTCATTGGTAGCTTCTAATACAACCACTATTGAGGCATATGAAAAGAAAACTACTTCAAAATGGCGTTATGACCTTGGTCGTAGAAAAAATTTTGAACAGGTTTTTGGAATGGACAAGAGATACTGGTTCATCCCTGCTTATTCAGAGGAAGATATACGAAGGATGCCTGTTCTTCAGGGCCTTGAGTATCCATCAACACCAGACTTCAATGCCCAAGAGTTCTGA
Predicted protein sequences of Glyma09g40600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g40600.1 sequence type=predicted peptide gene model=Glyma09g40600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYRSGAGMAWNVFRFCTALRGLGSIMILMVLGVVGVTYYAVVLTNFGPALFLGGLDTLISFVVLILFHCLLVMLLWCYFAVVFMDPGTVPPNWKPAADEERGEVDPLNGVELSNLQSDPANQRFRYCRKCSQPKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLVYTFLETTLVTISLLPHFKTYFSDGEIPGTPGTLATTFLTFVLNLAFSLSVLGFLVLHVSLVASNTTTIEAYEKKTTSKWRYDLGRRKNFEQVFGMDKRYWFIPAYSEEDIRRMPVLQGLEYPSTPDFNAQEF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
