Glyma09g40560 - SoyBase

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Report for Sequence Feature Glyma09g40560

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45463847
stop:	45469068
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00090	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr4:34234-36594 FORWARD LENGTH=430	SoyBase	E_val: 0	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG2096	KOG	WD40 repeat protein	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF183	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9RDD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L6V1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6V1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40560

Paralog	Evidence	Comments
Glyma18g45270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g269300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g40560

Limit To All Plant Sequences

>Glyma09g40560.1   sequence type=CDS   gene model=Glyma09g40560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAGCGTTACCCATTGTAGCGCTGTCGCTTCTCTTGGGTGCCATCATCGCCTTCCTCATCTTCAACACCTACTTCTGCAAGCGCCAATCCGAAATCCGATCCATCGCCGATCCAAATCCAAATTCAAATTCGAATCCCAAACTCGTGTCTTCCAAACCCCCTCCCAAGAAGCCTCTCTCCAAACCCCATTCCTCCGACAAGGATCAAAACAAGCGTCACCATCCGTTGGATTTGAATACCTTGAAGGGTCATGGTGATGCAGTGACAGGGGTATGCTTCTCCCGCGATGGACGAAATTTGGCAACTGCTTGCGCTGATGGAGTTGTGAGAGTATTCAAGTTGGATGATGCTTCGAGTAAAAGTTTCAAGTTTCTAAGGATTAATTTGCCTGCCGGCGGTCATCCAACGGCAGTTGCATTTTCCGATGATGCATCCTCCATTGTTGTGGCGTCTTATACTCTGTCCGGTTGTTCATTATACATGTATGGAGAAGAGAAACCTAAAACATCTGAAGACAAACCACAAGCAAAGCTTCCTCTCCCCGAAATTAAGTGGGAGCATCACAAAGTTCATGATAAGAAGTCAATAATTACTATGTTTGGAGCCTCTGCAACTTATGGCACTGCTGATGGAAGTACAATTATTGCCTCGTGTTCAGAAGGGACTGACATCATTCTTTGGCATGGAAAAACTGGGAAGAGTGTTGGGCATGTCGATACAAATCAATTGAAAAATAACATGGCTACTATATCACCCAACGGTCGTTTTATTGCAGCTGCAGCATTTACTGCCGATGTGAAGATCTGGGAGATTGTATATGCAAAGGATGGATCTGTGAAGGAAGTTTTAAATGTTATGCAGCTTAAGGGGCATAAGAGTGCTGTGACTTGGTTATGCTTTACGCCAAACTCTGAGCAAATAATCACTGCATCCAAGGATGGTTCAATGAGAATATGGAATATCAATGTTCGCTATCATCTTGATGAGGATCCAAAGACGCTAAAGGTGTTCCCAATTCCTCTTCATGATTCTTCCGGTACTACATTGCACTATGATCGCATGAGTGTTTCCCCTGATGGAAATTTTTTGGCTGCGACCCATGGTTCCACATTGCAGTGGTTATGTGTTGAGACTGGAAAGGTTCTGGATACAGCTGAAAAAGCCCATGATAGTGACATTTCATGCATTTCATGGGCTCCTAAAACTATTCCAATGGGAAATGAACAAGTTTTGGTTTTAGCCACAGCCAGTGCTGACAAGAAAGTGAAGTTATGGGCATCTCCATCTATCCCTGCATCCTAA

Predicted protein sequences of Glyma09g40560

Limit To All Plant Sequences

>Glyma09g40560.1   sequence type=predicted peptide   gene model=Glyma09g40560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPALPIVALSLLLGAIIAFLIFNTYFCKRQSEIRSIADPNPNSNSNPKLVSSKPPPKKPLSKPHSSDKDQNKRHHPLDLNTLKGHGDAVTGVCFSRDGRNLATACADGVVRVFKLDDASSKSFKFLRINLPAGGHPTAVAFSDDASSIVVASYTLSGCSLYMYGEEKPKTSEDKPQAKLPLPEIKWEHHKVHDKKSIITMFGASATYGTADGSTIIASCSEGTDIILWHGKTGKSVGHVDTNQLKNNMATISPNGRFIAAAAFTADVKIWEIVYAKDGSVKEVLNVMQLKGHKSAVTWLCFTPNSEQIITASKDGSMRIWNINVRYHLDEDPKTLKVFPIPLHDSSGTTLHYDRMSVSPDGNFLAATHGSTLQWLCVETGKVLDTAEKAHDSDISCISWAPKTIPMGNEQVLVLATASADKKVKLWASPSIPAS*

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