Glyma09g40460 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g40460

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45374238
stop:	45378075
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45440	AT	Annotation by Michelle Graham. TAIR10: dihydrodipicolinate synthase \| chr2:18731294-18732867 FORWARD LENGTH=365	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009089	GO-bp	Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008840	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrodipicolinate synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
PTHR12128	Panther	DIHYDRODIPICOLINATE SYNTHASE	JGI		ISS
PF00701	PFAM	Dihydrodipicolinate synthetase family	JGI		ISS
UniRef100_I1L6T8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6T8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q42800	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydrodipicolinate synthase, chloroplastic n=1 Tax=Glycine max RepID=DAPA_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40460

Paralog	Evidence	Comments
Glyma18g45380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g268200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g40460

Limit To All Plant Sequences

>Glyma09g40460.1   sequence type=CDS   gene model=Glyma09g40460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACACTCAAGAGCCTCTGCTTCAGAGGAACTGCCTTTCCCGTTTGCCCCTCCAATGTCACCAACAATAGAAACTCCAGGAGCTCATATTGGAGGCCTGCACAAGCAGCCGTGAAGCCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCCGAAGGTATTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCACACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAAGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTATGCTTGCTCACTTTCAAAGTGTGCTTTCCATGGGTCCCACAATAATCTACAATGTGCCTGCACGGACTGGTCAAGACATTCCCCCGCATGTAATTCAAACCTTAGCTGAAAGTGCTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGGATCAAGCAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGTGTGATATCTGTTGTAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTTGGCGGCGTAAACCCTACACTAAATTCTAAGCTTTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGAGTTGTCAGACCCGTTTTTAGGCTACCGTTTGTACCTCTCCCTGTGGACAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGATGACTTTTTCTTGGTTAGTCGTTATTAA

Predicted protein sequences of Glyma09g40460

Limit To All Plant Sequences

>Glyma09g40460.1   sequence type=predicted peptide   gene model=Glyma09g40460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLKSLCFRGTAFPVCPSNVTNNRNSRSSYWRPAQAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGIIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMLAHFQSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVISVVSNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain