Glyma09g40400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g40400

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45327201
stop:	45330395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20070	AT	Annotation by Michelle Graham. TAIR10: titan9 \| chr3:7004950-7006625 REVERSE LENGTH=282	SoyBase	E_val: 1.00E-66	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009960	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosperm development	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L6T0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6T0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LJZ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein titan9 n=1 Tax=Arabidopsis thaliana RepID=Q9LJZ4_ARATH	SoyBase	E_val: 7.00E-64	ISS

Expression Patterns of Glyma09g40400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40400

Paralog	Evidence	Comments
Glyma18g45446	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g267400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40400

Limit To All Plant Sequences

>Glyma09g40400.2   sequence type=transcript   gene model=Glyma09g40400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAAAATTAGAAGGGAAAAACATTGTGAAAACGGTGCGTACGTCGTTCAAATTAACTCCCCTTTTTCCGGCCCTAATTTGAATTTGTGCGCCATTCCAAAACCAGTGCAGTGAAAATCACGTATCTGCAATGGAAATTCTGTATTCGAAGCTCTACGACAAGTACACCAAACTCAAGTCTAAGAAACTCTCCGATTTGGATCACATAAACAAAGAACAAGAGGGTAAATTCGTGAATTACTTGACCGCTGCGGAAGAGTTGATAGAGCACTTGAAGAGCGAGAAGGAAGGGCTTGTTGAACAAGTCAATGAGGCTGCCAAAGAGAAAGAGGTTGCGGATTATCAAAAGCTTTTGATGGAGGAAAAAGAAAAAAATGAAGCTCTTTCTGAAGAAGTTGAGAAATTGCTAAAGCTTCACCAGGAAAGAACATCTCATGTTTTATATAATAACAGCAAGATCAAGACCGTAGATGATCAGTTTAAGGCAAACTCTAACAGCTCATCTATAAGAATGACAAGAAAACATACAAAGCAGATTGCTTTGGAGAAAGAAGCAAGGTCAATATCTTTGGAAAATGAAGGTAATTCTGTGGAGAGAGAGTCAACACCAAATGCCTGCAAGGAGACTGTTTCTGACAATCTGTTGGAGTGTTGTACCAAGGCTAACGATCGATCAGGCATTGATTTACATGAAAGTGGTCATGGTAACTGGCTTATTCAAACTCTTTTTGAGTATGCACTGAGCATGAAATTATCCTTGGATTATCAAGCAGGACGAATATGCCTGTCTGCACTGCATGGATCAAGCGGTTACTCCTTCAGTTTATCGTGGATCGGCAAATCACCTGGAGAGGAGGAAGCAGAAGCAGAGCTGCTGTACCATGTTATATCTCTAGGCACATTTGAAAGAGTGGCACCAGAATGGATGAGGGAGGACATCATGTTCAGCCCAAGCATGTGCCCCATCTTCTTTGAAAGGATATCTCGTGTTATAAAGTTGAACCACTAGTGTTTTTTTGTATCATTGATCTGCCGAATGTGTATTTACTGTACATACTAACTGATTAATTTTTATTTGGAGAACATTGAGTTTTGTGTGTAGATTTGCTAGTTTCTCTCCAATCCCATTTCATATGCCATTTGCAAATTCAAAGAATTTGTTAGGTTATTTAGTAGACCTATAAATGGTAAGAAAATACGTTTTTGA

Coding sequences of Glyma09g40400

Limit To All Plant Sequences

>Glyma09g40400.1   sequence type=CDS   gene model=Glyma09g40400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTCTGTATTCGAAGCTCTACGACAAGTACACCAAACTCAAGTCTAAGAAACTCTCCGATTTGGATCACATAAACAAAGAACAAGAGGGTAAATTCGTGAATTACTTGACCGCTGCGGAAGAGTTGATAGAGCACTTGAAGAGCGAGAAGGAAGGGCTTGTTGAACAAGTCAATGAGTTGAGAACTGAATTTTCTTCACTTAGGGCTGCCAAAGAGAAAGAGGTTGCGGATTATCAAAAGCTTTTGATGGAGGAAAAAGAAAAAAATGAAGCTCTTTCTGAAGAAGTTGAGAAATTGCTAAAGCTTCACCAGGAAAGAACATCTCATGTTTTATATAATAACAGCAAGATCAAGACCGTAGATGATCAGTTTAAGGCAAACTCTAACAGCTCATCTATAAGAATGACAAGAAAACATACAAAGCAGATTGCTTTGGAGAAAGAAGCAAGGTCAATATCTTTGGAAAATGAAGGTAATTCTGTGGAGAGAGAGTCAACACCAAATGCCTGCAAGGAGACTGTTTCTGACAATCTGTTGGAGTGTTGTACCAAGGCTAACGATCGATCAGGCATTGATTTACATGAAAGTGGTCATGGTAACTGGCTTATTCAAACTCTTTTTGAGTATGCACTGAGCATGAAATTATCCTTGGATTATCAAGCAGGACGAATATGCCTGTCTGCACTGCATGGATCAAGCGGTTACTCCTTCAGTTTATCGTGGATCGGCAAATCACCTGGAGAGGAGGAAGCAGAAGCAGAGCTGCTGTACCATGTTATATCTCTAGGCACATTTGAAAGAGTGGCACCAGAATGGATGAGGGAGGACATCATGTTCAGCCCAAGCATGTGCCCCATCTTCTTTGAAAGGATATCTCGTGTTATAAAGTTGAACCACTAG

>Glyma09g40400.2   sequence type=CDS   gene model=Glyma09g40400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTCTGTATTCGAAGCTCTACGACAAGTACACCAAACTCAAGTCTAAGAAACTCTCCGATTTGGATCACATAAACAAAGAACAAGAGGGTAAATTCGTGAATTACTTGACCGCTGCGGAAGAGTTGATAGAGCACTTGAAGAGCGAGAAGGAAGGGCTTGTTGAACAAGTCAATGAGGCTGCCAAAGAGAAAGAGGTTGCGGATTATCAAAAGCTTTTGATGGAGGAAAAAGAAAAAAATGAAGCTCTTTCTGAAGAAGTTGAGAAATTGCTAAAGCTTCACCAGGAAAGAACATCTCATGTTTTATATAATAACAGCAAGATCAAGACCGTAGATGATCAGTTTAAGGCAAACTCTAACAGCTCATCTATAAGAATGACAAGAAAACATACAAAGCAGATTGCTTTGGAGAAAGAAGCAAGGTCAATATCTTTGGAAAATGAAGGTAATTCTGTGGAGAGAGAGTCAACACCAAATGCCTGCAAGGAGACTGTTTCTGACAATCTGTTGGAGTGTTGTACCAAGGCTAACGATCGATCAGGCATTGATTTACATGAAAGTGGTCATGGTAACTGGCTTATTCAAACTCTTTTTGAGTATGCACTGAGCATGAAATTATCCTTGGATTATCAAGCAGGACGAATATGCCTGTCTGCACTGCATGGATCAAGCGGTTACTCCTTCAGTTTATCGTGGATCGGCAAATCACCTGGAGAGGAGGAAGCAGAAGCAGAGCTGCTGTACCATGTTATATCTCTAGGCACATTTGAAAGAGTGGCACCAGAATGGATGAGGGAGGACATCATGTTCAGCCCAAGCATGTGCCCCATCTTCTTTGAAAGGATATCTCGTGTTATAAAGTTGAACCACTAG

Predicted protein sequences of Glyma09g40400

Limit To All Plant Sequences

>Glyma09g40400.1   sequence type=predicted peptide   gene model=Glyma09g40400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEILYSKLYDKYTKLKSKKLSDLDHINKEQEGKFVNYLTAAEELIEHLKSEKEGLVEQVNELRTEFSSLRAAKEKEVADYQKLLMEEKEKNEALSEEVEKLLKLHQERTSHVLYNNSKIKTVDDQFKANSNSSSIRMTRKHTKQIALEKEARSISLENEGNSVERESTPNACKETVSDNLLECCTKANDRSGIDLHESGHGNWLIQTLFEYALSMKLSLDYQAGRICLSALHGSSGYSFSLSWIGKSPGEEEAEAELLYHVISLGTFERVAPEWMREDIMFSPSMCPIFFERISRVIKLNH*

>Glyma09g40400.2   sequence type=predicted peptide   gene model=Glyma09g40400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEILYSKLYDKYTKLKSKKLSDLDHINKEQEGKFVNYLTAAEELIEHLKSEKEGLVEQVNEAAKEKEVADYQKLLMEEKEKNEALSEEVEKLLKLHQERTSHVLYNNSKIKTVDDQFKANSNSSSIRMTRKHTKQIALEKEARSISLENEGNSVERESTPNACKETVSDNLLECCTKANDRSGIDLHESGHGNWLIQTLFEYALSMKLSLDYQAGRICLSALHGSSGYSFSLSWIGKSPGEEEAEAELLYHVISLGTFERVAPEWMREDIMFSPSMCPIFFERISRVIKLNH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain