Glyma09g40320 - SoyBase

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Report for Sequence Feature Glyma09g40320

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45266273
stop:	45267779
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18030	AT	Annotation by Michelle Graham. TAIR10: HAL3-like protein A \| chr3:6167883-6168629 REVERSE LENGTH=209	SoyBase	E_val: 1.00E-71	ISS
GO:0015937	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004633	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphopantothenoylcysteine decarboxylase activity	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
KOG0672	KOG	Halotolerance protein HAL3 (contains flavoprotein domain)	JGI		ISS
PTHR14359	Panther	PHOSPHOPENTOTHENOYLCYSTEINE DECARBOXYLASE	JGI		ISS
PTHR14359:SF12	Panther	PHOSPHOPENTOTHENOYLCYSTEINE DECARBOXYLASE	JGI		ISS
PF02441	PFAM	Flavoprotein	JGI		ISS
UniRef100_G7LCR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphopantothenoylcysteine decarboxylase n=1 Tax=Medicago truncatula RepID=G7LCR5_MEDTR	SoyBase	E_val: 1.00E-73	ISS
UniRef100_I1L6S5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L6S5_SOYBN	SoyBase	E_val: 2.00E-137	ISS

Expression Patterns of Glyma09g40320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40320

Paralog	Evidence	Comments
Glyma18g45636	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g267000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g40320

Limit To All Plant Sequences

>Glyma09g40320.2   sequence type=CDS   gene model=Glyma09g40320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGTCTGGTCCTGCAAGGGAAAAGGGCAAGGCAAAAGCTGTGGCAAGAAGAACTAGGGCAAGAGCTAAGGCTAAAGCTAAGGCTAAAGCTAAGGCAAAAGATAATACAAAAGCTAATACAAAAGCTAAGGCAGAAGCTAATACAGAAGCTAAGGCAAAAACTAATACAGAAGCTAAGGAAAAAACTAATACAGAAGCTAAGGCAGAGTGTGCTCCTCCTCCAGAGAAGCCTCGGGTTCTGCTTGCTTGTTGTGGAAGTATTTGTGCAGCAAAATTTGAGCGTGTTTGTAGACATTTTTTAGAATGGGCAGAAGTGAAGGTAGTTCTCACAAGATCAGCTTTGCCTTATATTGGAGATCAAACATTTCCCGATGATCTACTTGCATGTATTGATGAGCACGAGTGGCTTACTTGGAAACAGATAGGTGATCCTGTGGTCCACATTGAGCTTCGTGAATGGGCTGATATCATGATCATTGCTCCATTGTCATTAAACACTCTTGGCAAGATAGCGGGAGGGTTGTGTGACAATCTTCTGACATGCATTGTGAGAGCATGGGACTACGAGAAGCCATTTTTTGTTGCACCATCCATGGAGTCTTCTGAGTGGATAGACTCATTAACTGAAGATCATGCGATGGCCATTGATGAGCTTGGCATCCATCTCATCCCACCTGTTCCTCAGAGGGCATCTGAGTATCACGCAATGGCACAACCTTTCACCATTTACTCAAGTGTGAGAGCTTCTTATGAGTTAAAGATGAAAGGAAAGTATGGTCAGGTTTAG

Predicted protein sequences of Glyma09g40320

Limit To All Plant Sequences

>Glyma09g40320.2   sequence type=predicted peptide   gene model=Glyma09g40320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSGPAREKGKAKAVARRTRARAKAKAKAKAKAKDNTKANTKAKAEANTEAKAKTNTEAKEKTNTEAKAECAPPPEKPRVLLACCGSICAAKFERVCRHFLEWAEVKVVLTRSALPYIGDQTFPDDLLACIDEHEWLTWKQIGDPVVHIELREWADIMIIAPLSLNTLGKIAGGLCDNLLTCIVRAWDYEKPFFVAPSMESSEWIDSLTEDHAMAIDELGIHLIPPVPQRASEYHAMAQPFTIYSSVRASYELKMKGKYGQV*

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