Glyma09g40290 - SoyBase

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Report for Sequence Feature Glyma09g40290

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45235534
stop:	45242618
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61050	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr3:22597485-22600932 FORWARD LENGTH=510	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009958	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive gravitropism	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031965	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear membrane	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10774	Panther	CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED)	JGI		ISS
PTHR10774:SF2	Panther	CALCIUM LIPID BINDING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7L1E7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Extended synaptotagmin-2-A n=1 Tax=Medicago truncatula RepID=G7L1E7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L6S3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6S3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40290

Paralog	Evidence	Comments
Glyma18g45723	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g266600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40290

Limit To All Plant Sequences

>Glyma09g40290.2   sequence type=transcript   gene model=Glyma09g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAACCAATAAAATGCATCAAGAAAAAGAAAACAGAAGGATGGTAAATTGATGCTGAACGAGTTTAGTCAGTCCCTTACAAGTTTCATTCCAATCATGCGAAGGAAGAGGCAAAGAACTCACCACAATCCCTCATTTTTACGTTACAAATAAGAAAAAAACCACAGTTTTGAAACACACACAGAGAAACAGAGAGATTCTTCCATTACTACAAAATAGAAAAATAAAACTTCAATTGCACCTTTTGGTGTCTTTTTCAATTCTCATCCCAATTGGTGTTCATTTCCCCAATTTTGACCCTTTGTGATCCTTTTCTCAAATCTCACACTTTGTTTGGAATCTGGGAAAAATGGGGTTGTTTTCTGGGATATTTCTGGGGATGGTACTGGGCATAGCATTGATGGCTGCGTGGCAACGCATGATGACGTACCGTAGCGCCAAGAGAATTGCAAAGGTATGATGGTTTGGTTTGTTCTGCTTATTTCGAATTCGGGATTTTGATGATCAATGTTTTGGAAAGAAAAAAAAATTATGGATTTCATTGTACTGGGCAATGTTGAAGAAAAGTTGATGAATTAAGAAAAGCTGATGATCAATGGATCAGTGCGTGAAGTCTTTGAATATTTAAATGAAAATCTGGCAGATCATCCAGAGGTTTATGGAATGGCTAATGATAACCTACTGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATCTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCCATATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATTAGAGAATCTGTTGAGCCACTGTTGGAAGAGTACAGACCAACTGGAATTTCTTCATTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGCGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCCTGCATTTCTGCTGTTGTCGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACGGCACTGCCTGGAATTTCAGATATGATTGATGATATGGTGAACTCAATCGTTACCGATACGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGACTGTAATTAAAGCGAATGACCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGTATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTGTTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCACTTAATGACATGGAACCAGAAACCGAAAAGGAGTTTGAATTGAGGATGCTGTCATCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACAATGAAGATCTTTTATCACCAATTTAACAAGGAAGAACAGTTAGTTGCACTAGAAGCAGAGAAAAATATACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGCATCGGCAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTGCTACTGGTGCTGGACTTGTGGGGACTGGAATTGGTGCAGGAGCTGGATTTGTTGGGACTGGAATTGGTACTGGAGCCGGGTTTGTTGGCAGCGGCATCGGTGCTGGAGTTGGTTTTGTCGGCAGCGGTCTTGGTGCTGTTGGTAGTGGACTGAGCAGAGCAGGAAAGTTCATGGGAAGGACAATCACAGGCCAAGGTAGTTCCAGAAGGAGTGGTTCAAATACTCCTGTCAATGTGGAGGAGACTGGTGGTGGTGCAAAACCGCTGCAGCAGTAATCCCCCCTTCGGCACTGCTTGAATGTTTAGTTTAAGCTTTTCACAGTAGATATATAATATTACCTGTTTTTTGTTCTTTTTTCCATATTCTGAGGCTTCTGTTAATGGAAATAGATTGAACACTTGTAGAAAAGTCACTTCAGTTTTAGTTGTACCATCTTTTTCTGTAATTGTTTCACAGGGACGTGCAATAAAACACATTGTAAAAATTCATATATTTCATTGGAAATTAAAGTGATTCCAAACAATTTTTTTTTTGTTATTGTTATAACTATG

Coding sequences of Glyma09g40290

Limit To All Plant Sequences

>Glyma09g40290.1   sequence type=CDS   gene model=Glyma09g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGTTTTCTGGGATATTTCTGGGGATGGTACTGGGCATAGCATTGATGGCTGCGTGGCAACGCATGATGACGTACCGTAGCGCCAAGAGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATCTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCCATATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATTAGAGAATCTGTTGAGCCACTGTTGGAAGAGTACAGACCAACTGGAATTTCTTCATTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGCGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCCTGCATTTCTGCTGTTGTCGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACGGCACTGCCTGGAATTTCAGATATGATTGATGATATGGTGAACTCAATCGTTACCGATACGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGACTGTAATTAAAGCGAATGACCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGTATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTGTTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCACTTAATGACATGGAACCAGAAACCGAAAAGGAGTTTGAATTGAGGATGCTGTCATCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACAATGAAGATCTTTTATCACCAATTTAACAAGGAAGAACAGTTAGTTGCACTAGAAGCAGAGAAAAATATACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGCATCGGCAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTGCTACTGGTGCTGGACTTGTGGGGACTGGAATTGGTGCAGGAGCTGGATTTGTTGGGACTGGAATTGGTACTGGAGCCGGGTTTGTTGGCAGCGGCATCGGTGCTGGAGTTGGTTTTGTCGGCAGCGGTCTTGGTGCTGTTGGTAGTGGACTGAGCAGAGCAGGAAAGTTCATGGGAAGGACAATCACAGGCCAAGGTAGTTCCAGAAGGAGTGGTTCAAATACTCCTGTCAATGTGGAGGAGACTGGTGGTGGTGCAAAACCGCTGCAGCAGTAA

>Glyma09g40290.2   sequence type=CDS   gene model=Glyma09g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAATGGATCAGTGCGTGAAGTCTTTGAATATTTAAATGAAAATCTGGCAGATCATCCAGAGGTTTATGGAATGGCTAATGATAACCTACTGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATCTGTGGGGATAATTTTCCTGAATGGATATCTTTTCCCATATATGAGCAGGTGAAATGGCTAAACAAGCAGCTGTCCAAACTTTGGCCATTTGTGGCAGATGCAGCAACATTGGTGATTAGAGAATCTGTTGAGCCACTGTTGGAAGAGTACAGACCAACTGGAATTTCTTCATTGAAGTTCAGCAAGCTGTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGCGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCCTGCATTTCTGCTGTTGTCGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACGGCACTGCCTGGAATTTCAGATATGATTGATGATATGGTGAACTCAATCGTTACCGATACGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAGAGTGACTGTAATTAAAGCGAATGACCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGCAGTGTTGTATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTGTTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCACTTAATGACATGGAACCAGAAACCGAAAAGGAGTTTGAATTGAGGATGCTGTCATCACTTGATACACTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACAATGAAGATCTTTTATCACCAATTTAACAAGGAAGAACAGTTAGTTGCACTAGAAGCAGAGAAAAATATACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGCATCGGCAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTGCTACTGGTGCTGGACTTGTGGGGACTGGAATTGGTGCAGGAGCTGGATTTGTTGGGACTGGAATTGGTACTGGAGCCGGGTTTGTTGGCAGCGGCATCGGTGCTGGAGTTGGTTTTGTCGGCAGCGGTCTTGGTGCTGTTGGTAGTGGACTGAGCAGAGCAGGAAAGTTCATGGGAAGGACAATCACAGGCCAAGGTAGTTCCAGAAGGAGTGGTTCAAATACTCCTGTCAATGTGGAGGAGACTGGTGGTGGTGCAAAACCGCTGCAGCAGTAA

Predicted protein sequences of Glyma09g40290

Limit To All Plant Sequences

>Glyma09g40290.1   sequence type=predicted peptide   gene model=Glyma09g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLFSGIFLGMVLGIALMAAWQRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPEWISFPIYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPTGISSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNSIVTDTLQWPHRIVVPLGGIPVDTSELELKPQGTLRVTVIKANDLKNMEMIGKSDPYAVLYIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDMEPETEKEFELRMLSSLDTLKVKDKKDRGTITMKIFYHQFNKEEQLVALEAEKNILEERKKLKEEGVIGTTMDALDGAASAVGSGVGMVGTGVATGAGLVGTGIGAGAGFVGTGIGTGAGFVGSGIGAGVGFVGSGLGAVGSGLSRAGKFMGRTITGQGSSRRSGSNTPVNVEETGGGAKPLQQ*

>Glyma09g40290.2   sequence type=predicted peptide   gene model=Glyma09g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MINGSVREVFEYLNENLADHPEVYGMANDNLLAVDIKLLGSLNRDDLKKICGDNFPEWISFPIYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPTGISSLKFSKLSLGNVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNSIVTDTLQWPHRIVVPLGGIPVDTSELELKPQGTLRVTVIKANDLKNMEMIGKSDPYAVLYIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDMEPETEKEFELRMLSSLDTLKVKDKKDRGTITMKIFYHQFNKEEQLVALEAEKNILEERKKLKEEGVIGTTMDALDGAASAVGSGVGMVGTGVATGAGLVGTGIGAGAGFVGTGIGTGAGFVGSGIGAGVGFVGSGLGAVGSGLSRAGKFMGRTITGQGSSRRSGSNTPVNVEETGGGAKPLQQ*

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