Glyma09g40230 - SoyBase

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Report for Sequence Feature Glyma09g40230

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45183691
stop:	45200156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45660	AT	Annotation by Michelle Graham. TAIR10: AGAMOUS-like 20 \| chr2:18807799-18810193 REVERSE LENGTH=214	SoyBase	E_val: 1.00E-93	ISS
GO:0000060	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, translocation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010077	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription factor binding	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF19	Panther	MADS BOX PROTEIN	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_A1XG54	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SOC1 n=1 Tax=Glycine max RepID=A1XG54_SOYBN	SoyBase	E_val: 2.00E-144	ISS
UniRef100_I1L6S0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6S0_SOYBN	SoyBase	E_val: 8.00E-151	ISS

Expression Patterns of Glyma09g40230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40230

Paralog	Evidence	Comments
Glyma18g45780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g266200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40230

Limit To All Plant Sequences

>Glyma09g40230.4   sequence type=transcript   gene model=Glyma09g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTAATACTAATATATCCCCTTCCGTTCCCCCTTTTATTAACACCACTAGAACGTTTTCTGTTTTGGACCATGGACTTGGTTTTTACCAAATCAAGAAAAGGATGAGGTTTCAATTTTTCTATTACCATAAAACAATTTTGTTTCTTAATATGGTGAGGCTGGGGGAATCAATTGGGGATAGGTGGATGAATAAGGAAAGCTTGGTCTGATTAGTCTATACTATATGCCTTGCTATTCCACTTTTTCTGAGTTTTTCTCTGCACTCCTTTGCTAGCTACCCTCTCTTTTGGGGTATTTCTCTTTTCATTCTCCAAAAACTCTTCAAATTTCCTTCCCTTTTCTGTGCCTTATTTTCTCTTCACTGGTCAAAAGATTTCTGGGATTTTTGCTAATTTGGTGCAAATCTGATTCCCCTTTGACAAACCCTCCTCATCTCTTGGCTTATTGACAACTACTATAATTTCAAGTTGCTTTTTTTTTCCCCCTTTTTTCTAGCTGCTTTTTTGGGCCTTCAAATCTTGCTTGGAGAAGGCTCAATTTTGGTGGAAACCTCTCACACAAGAAAGCATAGTTTCTTTTGGGTTCATTCTACTTGGTGTTTAGAGATGGTGAGAGGAAAGACTCAGCTGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTTTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGACACAATTGAACGATACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCTTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAGTGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGATCAACTAAAAGAGAAGGAAAGAGCCCTATATGCTGAAAATGCTAGGCTGTGTGAGCAGTATGGTGGTATCCAGCCACAGCCAGCAACAAAGGATCCGAAAGAAATTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACTCAGGTCTAGCTATTGAACATAATTTAATCCTTGCCTATGCAAATATCAAATAAGAAGCCCAACTGCAATGTATAAATATCACATGTTTCCTAATACTGAGATGAATAATATTATCGCTTGTATTATATAAAGAACTTTCTAGCCTTATGATTAGGGTTTAATTATTGATATGTTTGCCTTTCCTCATTTCTGAAGCCCTTTTCATATATAATAGCATGCACAAAAGGGATCTAATTCAATTAGTTGAACATGGTATGTGAGTGATATAAATCTTTTGATACCGTCTTCGATTTCCATCAATTAAAAAAATATATAATAGCGTGCA

Coding sequences of Glyma09g40230

Limit To All Plant Sequences

>Glyma09g40230.3   sequence type=CDS   gene model=Glyma09g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGAGGAAAGACTCAGCTGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTTTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGACACAATTGAACGATACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCTTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAGTGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGATCAACTAAAAGAGAAGGAAAGAGCCCTATATGCTGAAAATGCTAGGCTGTGTGAGCAGTATGGTGGTATCCAGCCACAGCCAGCAACAAAGGATCCGAAAGAAATTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACTCAGGTCTAGCTATTGA

>Glyma09g40230.4   sequence type=CDS   gene model=Glyma09g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGAGGAAAGACTCAGCTGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTTTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGACACAATTGAACGATACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCTTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAGTGTTCGTGCAAGAAAGAATCAGGTTTACAAGGAACAAATTGATCAACTAAAAGAGAAGGAAAGAGCCCTATATGCTGAAAATGCTAGGCTGTGTGAGCAGTATGGTGGTATCCAGCCACAGCCAGCAACAAAGGATCCGAAAGAAATTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACTCAGGTCTAGCTATTGA

Predicted protein sequences of Glyma09g40230

Limit To All Plant Sequences

>Glyma09g40230.3   sequence type=predicted peptide   gene model=Glyma09g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSSVRARKNQVYKEQIDQLKEKERALYAENARLCEQYGGIQPQPATKDPKEIQPYAESSPSSEVETELFIGLLRSSY*

>Glyma09g40230.4   sequence type=predicted peptide   gene model=Glyma09g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSSVRARKNQVYKEQIDQLKEKERALYAENARLCEQYGGIQPQPATKDPKEIQPYAESSPSSEVETELFIGLLRSSY*

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