SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00230 | AT | Annotation by Michelle Graham. TAIR10: xylem serine peptidase 1 | chr4:93935-97289 FORWARD LENGTH=749 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0043086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| PTHR10795 | Panther | SUBTILISIN/KEXIN-RELATED SERINE PROTEASE | JGI | ISS | |
| PTHR10795:SF17 | Panther | gb def: possible protease [sinorhizobium meliloti] | JGI | ISS | |
| PF00082 | PFAM | Subtilase family | JGI | ISS | |
| PF05922 | PFAM | Peptidase inhibitor I9 | JGI | ISS | |
| UniRef100_G7L1F8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xylem serine proteinase n=1 Tax=Medicago truncatula RepID=G7L1F8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L6R8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6R8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g40210 not represented in the dataset |
Glyma09g40210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g266000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g40210.1 sequence type=CDS gene model=Glyma09g40210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTTTTACATTGTTTTTTTGGGAGCTCATACAGAGAGCAGAGGCAATGCACTTGACACTTATTTAAATGTTCTATCTGCTGTGAAGGAGAGCTTCCTTGAAGCAAAAGAATCCATGGTATATAGTTACACAAAGACCTTAAATGCATTTGCTGCAAAACTGTCAGAGGATGAAGCAAAGAAGTTATCTGCCATGGATGAAGTGCTCTTGGTGTTTCAAAACCAGTACCGCCAGCTGCACACAACAAGATCATGGAACTTCATCGGGTTACCTACAACTGCTAAGAGAAGATTGAAATCCGAGAGTGACATAATTGTTGCTCTTTTGGATACAGGGTTCACGCCTGAGTCTAAAAGCTTCAAGGATGATGGGTTTGGTCCTCCACCAGCAAGATGGAAAGGATCTTGTGGCCACTATGCAAATTTCTCAGGCTGCAATAAAAAGATTATAGGAGCCAAGTACTTCAAGGCTGATGGAAACCCTGATCCATCAGACATACTCTCTCCTGTGGATGCTGATGGCCATGGCACTCACACTGCATCAACTGTTGCAGGCAATCTGGTCCCAAATGCAAATCTCTTCGGGTTGGCCAACGGAACTGCTCGTGGCGCCGTGCCATCGGCTAGGTTGGCAATTTACAAAGTTTGCTGGTCATCTAGTGGATGTGCAGACATGGACATACTTGCTGCATTTGATGCTGCTATACATGATGGTGTGGATGTAATATCTATTTCCATAGGTGGAGGGAATCCTAGTTATGTTGAAGGCTCTATATCAATTGGTGCATTCCATGCCATGAGGAAAGGTATAATCACAGTGGCCTCAGCTGGAAATTCTGGTCCAAGCCTGGGAACTGTAACCAATACTGCACCATGGATTGTAACTGTAGCAGCTAGTGGCATTGACAGGACCTTTAGGAGCACTGTACAGTTGGGAAATGGAAAAAATGTTTCTGGGGTAGGTGTGAATTGTTTCGATCCAAAAGGAAAACAATACCCTCTTATCAATGGGGTTGATGCTGCCAAAGACTCAAAAGACAAGGAGGATGCTGGATTCTGCTACGAAGGCACATTACAGCCAAATAAAGTGAAGGGAAAGCTTGTTTATTGCAAATTAGGAACATGGGGCACTGAATCGGTTGTGAAAGGAATTGGGGGAATTGGTACTTTAATAGAAAGTGACCAATATCCTGATGTTGCTCAAATTTTCATGGCACCTGCTACCATTGTGACTAGTGGCACAGGTGACACTATTACCAAATATATACAATCCACAAGATCACCATCAGCAGTGATATACAAGAGCCGTGAAATGCAAATGCAAGCTCCATTTACTGCTTCATTTTCATCTAGAGGCCCAAATCCAGGATCCCAAAATGTTCTTAAGCCTGATGTTGCAGCTCCTGGCCTTGACATCTTGGCATCTTATACTCTCAGGAAGTCACTCACTGGTTTGAAAGGGGACACTCAATTTTCAGAATTTATTCTAATGTCTGGGACTTCCATGGCATGTCCTCATGTTGCTGGAGTAGCATCTTATGTGAAGTCATTTCACCCACATTGGACTCCGGCTGCAATTAGGTCTGCTATTATCACCACAGCAAAACCAATGAGCAAGAGAGTTAACAATGAGGCAGAATTTGCCTATGGTGCTGGTCAATTGAACCCAAGAAGTGCTGTGAGCCCTGGTCTAGTCTATGACATGGATGCCTTAGGTTATATCCAGTTCTTATGCCATGAGGGTTACAAAGGTTCCAGTTTATCAGCTTTAGTTGGTTCACCTGTAAATTGCTCCTCTTTGCTTCCTGGTCTTGGCCATGATGCTATCAACTACCCCACAATGCAATTGAGTCTGGAAAGCAACAAAGGCACAAGAGTAGGAGTTTTCAGAAGAACAGTGACCAATGTAGGTCCTGCTCCAACCATCTATAATGCCACCGTTAGATCACCTAAGGGAGTGGAAATCACAGTGAAGCCAACTAGCCTCACTTTTTCTAAAACCATGCAGAAAAGGAGCTTCAAAGTAGTTGTGAAAGCCACATCTATTGGAAGTGAGAAAATTGTATCAGGCTCCCTTATATGGAGAAGCCCACGTTACATTGTAAGGAGCCCTATAGTTATCAACAATCCATAA
>Glyma09g40210.1 sequence type=predicted peptide gene model=Glyma09g40210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNFYIVFLGAHTESRGNALDTYLNVLSAVKESFLEAKESMVYSYTKTLNAFAAKLSEDEAKKLSAMDEVLLVFQNQYRQLHTTRSWNFIGLPTTAKRRLKSESDIIVALLDTGFTPESKSFKDDGFGPPPARWKGSCGHYANFSGCNKKIIGAKYFKADGNPDPSDILSPVDADGHGTHTASTVAGNLVPNANLFGLANGTARGAVPSARLAIYKVCWSSSGCADMDILAAFDAAIHDGVDVISISIGGGNPSYVEGSISIGAFHAMRKGIITVASAGNSGPSLGTVTNTAPWIVTVAASGIDRTFRSTVQLGNGKNVSGVGVNCFDPKGKQYPLINGVDAAKDSKDKEDAGFCYEGTLQPNKVKGKLVYCKLGTWGTESVVKGIGGIGTLIESDQYPDVAQIFMAPATIVTSGTGDTITKYIQSTRSPSAVIYKSREMQMQAPFTASFSSRGPNPGSQNVLKPDVAAPGLDILASYTLRKSLTGLKGDTQFSEFILMSGTSMACPHVAGVASYVKSFHPHWTPAAIRSAIITTAKPMSKRVNNEAEFAYGAGQLNPRSAVSPGLVYDMDALGYIQFLCHEGYKGSSLSALVGSPVNCSSLLPGLGHDAINYPTMQLSLESNKGTRVGVFRRTVTNVGPAPTIYNATVRSPKGVEITVKPTSLTFSKTMQKRSFKVVVKATSIGSEKIVSGSLIWRSPRYIVRSPIVINNP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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