Glyma09g40110 - SoyBase

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Report for Sequence Feature Glyma09g40110

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45065446
stop:	45070771
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00740	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:307815-310298 REVERSE LENGTH=600	SoyBase	E_val: 0	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF58	Panther	DEHYDRATION-RESPONSIVE PROTEIN-RELATED	JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_I1L6R1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6R1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q93W95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable methyltransferase PMT13 n=1 Tax=Arabidopsis thaliana RepID=PMTD_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g40110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40110

Paralog	Evidence	Comments
Glyma18g45990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g265000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40110

Limit To All Plant Sequences

>Glyma09g40110.4   sequence type=transcript   gene model=Glyma09g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGAAACATTAATTGGTCCAAGACCAGAGAAGCTGAGCCATATCATATCAGATCCTGCTTCTTCTTCCTTTCCCTTTTTCTCACTCCCACTCTTCAAACTTGCCTCACTCTCACCAACACCCAACAAACAAAGTTACTTCATTGCAAACTCTATATTAGTCTTTACTCTATTTGTTTATTCCACCACTGAACAAAACCAGAGAAAGAAAGAAACAACCACCCCACGAAGCAAGTAAAGCAAAGCAACCCATTACGATTCCCGCGTAAAGCACCGATTTTGACACTGAATCCCGAGACCCAGATGGCGCAATAGCCCGATACGTAATTCTCCTCAAATGGGTCACTCCAATTCTTCCTCCTCCTCCTCGTCACCTTCCAAGCGCGGCCACGCGCTGCGGCAATGGCGGCTCCTGGACCTCGTCTCCGGTGTGTTCTTCTTCCTGGTGCTGCTATTCTTCGCCATGGTCTTCACCCCGCTCGGCGACTCGCTCGCCGCCTCCGGCCGCCAGACGCTGCTCCGCTCCGGCGCCGACCCGCGGCAGCACCACCGCCTCGTGGCCGCGATCGAGGCTGGGGGACGCGGCTTGGAGGCGTGTCCCGCCGCGGACGCGGACCACATGCCGTGCGAGGATCCGAGGCTGAACAGCCAGCTGAGCAGGGAGATGAACTACTACAGGGAGAGGCACTGTCCCAGGCCGGAGGACTCGCCACTCTGCTTGATTCCGCCGCCCCACGGGTACCGGGTTCCGGTGCCGTGGCCGGAGAGCTTGCACAAGATATGGCACAGCAACATGCCGTACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGGTACAATGTTTCCTGATGGAGCAGAACAATATATAGAAAAACTTGGTCAATACATTCCCATAAGTGAAGGTGTTCTGAGGACTGCACTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATATGCTGTCTAAGAATATTTTAACCATGTCTTTTGCACCAAGAGATTCACATAAAGCTCAAATACAATTTGCCTTGGAAAGAGGAGTACCAGCTTTTGTTGCTATGCTTGGCACCCGCAGACAACCTTTTCCTGCGTTTGGATTTGACTTGGTTCATTGCTCTAGGTGTTTGATCCCGTTTACAGCCTACAATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATGGTCTGATCTCCAAGCTGTGGCAAGAGCCTTGTGTTATGAACTGATTGCTGTAGATGGTAACACTGTGATCTGGAAGAAGCCAGCCGGAGAATCGTGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATGACCCAAGTCAAGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTATGCTATTGGGATAATTCCCAAGTGGCCGGAGAGGCTTACTGCAACACCTCCGAGATCCACACTCCTGAAAAACGGTGTTGATGTGTATGAGGCTGACACTAAGCGGTGGGTAAGGAGGGTGGCACACTATAAGAATTCTCTAAAAATCAAGTTGGGCACTCAATCTGTGCGCAATGTCATGGACATGAATGCATTATTTGGAGGTTTTGCGGCAGCCTTAAAATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGTCAGCGTTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGATGTACTCTTGTTGATTTAATGGTTGAAATTGATCGAATTTTGCGTCCTGAGGGAACTATGGTGGTAAGGGATGCTCCTGAAGTAATTGACAGAGTAGCTCACATTGCTGGTGCAGTGAGGTGGAAGCCTACGGTTTACGATAAAGAACCTGAATCACACGGCAGAGAAAAGATTCTAGTTGCAACCAAGACTCTCTGGAAGCTCTAATTCCCATTCCACGGACGCCACTGTGTAATTTAGGTGAATTCCCTTTTCCTTTCTGTGAGGGTGGTGTCAAAGATATCTTCTCTATGGCATCAAAGGGATGCCATGCCATTTTCTAATCTGATTCAATATTCTCATATAAAGGTTAAGATTTGAAAAAGATGGGAAGACCCTTGTGCAGTTTTAGGCGGAAAGCGGAAGCCAGTGTTGATTATACTTTCTCTCAACTTCAAAGATGGTTGTAATTCAAAAAAAAATTATATTAAAAAAGAATAATCATTGATTCTAGTTCAGCTACATTTCACCCTTTTTCTTTTCTTTTACATTTGTATTTTATTGTGAATTTTTATCATGGATTGAATCTAAAGTGTTAGAGATGTAATATTAAATCGATTGCGAAATTTCCTATCTGCTTAAGTTTTTTAGACTGTTAATTAAGAGCATGGTATCACGGGCTCTGAGATAAAGTGTTTGAGATGTAATATAAATTCATTCATGTATTTTCATCTAGCAATCTTTTGGAA

Coding sequences of Glyma09g40110

Limit To All Plant Sequences

>Glyma09g40110.3   sequence type=CDS   gene model=Glyma09g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCACTCCAATTCTTCCTCCTCCTCCTCGTCACCTTCCAAGCGCGGCCACGCGCTGCGGCAATGGCGGCTCCTGGACCTCGTCTCCGGTGTGTTCTTCTTCCTGGTGCTGCTATTCTTCGCCATGGTCTTCACCCCGCTCGGCGACTCGCTCGCCGCCTCCGGCCGCCAGACGCTGCTCCGCTCCGGCGCCGACCCGCGGCAGCACCACCGCCTCGTGGCCGCGATCGAGGCTGGGGGACGCGGCTTGGAGGCGTGTCCCGCCGCGGACGCGGACCACATGCCGTGCGAGGATCCGAGGCTGAACAGCCAGCTGAGCAGGGAGATGAACTACTACAGGGAGAGGCACTGTCCCAGGCCGGAGGACTCGCCACTCTGCTTGATTCCGCCGCCCCACGGGTACCGGGTTCCGGTGCCGTGGCCGGAGAGCTTGCACAAGATATGGCACAGCAACATGCCGTACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGGTACAATGTTTCCTGATGGAGCAGAACAATATATAGAAAAACTTGGTCAATACATTCCCATAAGTGAAGGTGTTCTGAGGACTGCACTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATATGCTGTCTAAGAATATTTTAACCATGTCTTTTGCACCAAGAGATTCACATAAAGCTCAAATACAATTTGCCTTGGAAAGAGGAGTACCAGCTTTTGTTGCTATGCTTGGCACCCGCAGACAACCTTTTCCTGCGTTTGGATTTGACTTGGTTCATTGCTCTAGGTGTTTGATCCCGTTTACAGCCTACAATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATGGTCTGATCTCCAAGCTGTGGCAAGAGCCTTGTGTTATGAACTGATTGCTGTAGATGGTAACACTGTGATCTGGAAGAAGCCAGCCGGAGAATCGTGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATGACCCAAGTCAAGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTATGCTATTGGGATAATTCCCAAGTGGCCGGAGAGGCTTACTGCAACACCTCCGAGATCCACACTCCTGAAAAACGGTGTTGATGTGTATGAGGCTGACACTAAGCGGTGGGTAAGGAGGGTGGCACACTATAAGAATTCTCTAAAAATCAAGTTGGGCACTCAATCTGTGCGCAATGTCATGGACATGAATGCATTATTTGGAGGTTTTGCGGCAGCCTTAAAATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGTCAGCGTTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGATGTACTCTTGTTGATTTAATGGTTGAAATTGATCGAATTTTGCGTCCTGAGGGAACTATGGTGGTAAGGGATGCTCCTGAAGTAATTGACAGAGTAGCTCACATTGCTGGTGCAGTGAGGTGGAAGCCTACGGTTTACGATAAAGAACCTGAATCACACGGCAGAGAAAAGATTCTAGTTGCAACCAAGACTCTCTGGAAGCTCTAA

>Glyma09g40110.4   sequence type=CDS   gene model=Glyma09g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCACTCCAATTCTTCCTCCTCCTCCTCGTCACCTTCCAAGCGCGGCCACGCGCTGCGGCAATGGCGGCTCCTGGACCTCGTCTCCGGTGTGTTCTTCTTCCTGGTGCTGCTATTCTTCGCCATGGTCTTCACCCCGCTCGGCGACTCGCTCGCCGCCTCCGGCCGCCAGACGCTGCTCCGCTCCGGCGCCGACCCGCGGCAGCACCACCGCCTCGTGGCCGCGATCGAGGCTGGGGGACGCGGCTTGGAGGCGTGTCCCGCCGCGGACGCGGACCACATGCCGTGCGAGGATCCGAGGCTGAACAGCCAGCTGAGCAGGGAGATGAACTACTACAGGGAGAGGCACTGTCCCAGGCCGGAGGACTCGCCACTCTGCTTGATTCCGCCGCCCCACGGGTACCGGGTTCCGGTGCCGTGGCCGGAGAGCTTGCACAAGATATGGCACAGCAACATGCCGTACAACAAGATTGCTGACAGGAAAGGTCACCAGGGATGGATGAAACTAGAAGGTCAACACTTTATATTCCCTGGTGGTGGTACAATGTTTCCTGATGGAGCAGAACAATATATAGAAAAACTTGGTCAATACATTCCCATAAGTGAAGGTGTTCTGAGGACTGCACTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATATGCTGTCTAAGAATATTTTAACCATGTCTTTTGCACCAAGAGATTCACATAAAGCTCAAATACAATTTGCCTTGGAAAGAGGAGTACCAGCTTTTGTTGCTATGCTTGGCACCCGCAGACAACCTTTTCCTGCGTTTGGATTTGACTTGGTTCATTGCTCTAGGTGTTTGATCCCGTTTACAGCCTACAATGCCTCTTATTTCATTGAAGTGGACAGATTACTTCGTCCTGGTGGATATTTTGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGATAAAGAATGGTCTGATCTCCAAGCTGTGGCAAGAGCCTTGTGTTATGAACTGATTGCTGTAGATGGTAACACTGTGATCTGGAAGAAGCCAGCCGGAGAATCGTGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATGACCCAAGTCAAGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTATGCTATTGGGATAATTCCCAAGTGGCCGGAGAGGCTTACTGCAACACCTCCGAGATCCACACTCCTGAAAAACGGTGTTGATGTGTATGAGGCTGACACTAAGCGGTGGGTAAGGAGGGTGGCACACTATAAGAATTCTCTAAAAATCAAGTTGGGCACTCAATCTGTGCGCAATGTCATGGACATGAATGCATTATTTGGAGGTTTTGCGGCAGCCTTAAAATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGGTGCGAACCATTTTCAACATATCCTCGTAGCTATGATCTAATCCATGTGGTCAGCGTTGAATCCCTTATAAAAGATCCAGCATCTGGTCAAAACAGATGTACTCTTGTTGATTTAATGGTTGAAATTGATCGAATTTTGCGTCCTGAGGGAACTATGGTGGTAAGGGATGCTCCTGAAGTAATTGACAGAGTAGCTCACATTGCTGGTGCAGTGAGGTGGAAGCCTACGGTTTACGATAAAGAACCTGAATCACACGGCAGAGAAAAGATTCTAGTTGCAACCAAGACTCTCTGGAAGCTCTAA

Predicted protein sequences of Glyma09g40110

Limit To All Plant Sequences

>Glyma09g40110.3   sequence type=predicted peptide   gene model=Glyma09g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHSNSSSSSSSPSKRGHALRQWRLLDLVSGVFFFLVLLFFAMVFTPLGDSLAASGRQTLLRSGADPRQHHRLVAAIEAGGRGLEACPAADADHMPCEDPRLNSQLSREMNYYRERHCPRPEDSPLCLIPPPHGYRVPVPWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQYIPISEGVLRTALDMGCGVASFGGYMLSKNILTMSFAPRDSHKAQIQFALERGVPAFVAMLGTRRQPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYFVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPAGESCLPNENEFGLELCDDSDDPSQAWYFKLKKCVSRTYVKGDYAIGIIPKWPERLTATPPRSTLLKNGVDVYEADTKRWVRRVAHYKNSLKIKLGTQSVRNVMDMNALFGGFAAALKSDPVWVMNVVPAQKPPTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVVSVESLIKDPASGQNRCTLVDLMVEIDRILRPEGTMVVRDAPEVIDRVAHIAGAVRWKPTVYDKEPESHGREKILVATKTLWKL*

>Glyma09g40110.4   sequence type=predicted peptide   gene model=Glyma09g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHSNSSSSSSSPSKRGHALRQWRLLDLVSGVFFFLVLLFFAMVFTPLGDSLAASGRQTLLRSGADPRQHHRLVAAIEAGGRGLEACPAADADHMPCEDPRLNSQLSREMNYYRERHCPRPEDSPLCLIPPPHGYRVPVPWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQYIPISEGVLRTALDMGCGVASFGGYMLSKNILTMSFAPRDSHKAQIQFALERGVPAFVAMLGTRRQPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYFVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPAGESCLPNENEFGLELCDDSDDPSQAWYFKLKKCVSRTYVKGDYAIGIIPKWPERLTATPPRSTLLKNGVDVYEADTKRWVRRVAHYKNSLKIKLGTQSVRNVMDMNALFGGFAAALKSDPVWVMNVVPAQKPPTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVVSVESLIKDPASGQNRCTLVDLMVEIDRILRPEGTMVVRDAPEVIDRVAHIAGAVRWKPTVYDKEPESHGREKILVATKTLWKL*

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