Glyma09g40060 - SoyBase

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Report for Sequence Feature Glyma09g40060

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45022919
stop:	45029276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g40060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01820	AT	Annotation by Michelle Graham. TAIR10: peroxin 11c \| chr1:296213-297723 REVERSE LENGTH=235	SoyBase	E_val: 2.00E-143	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0016559	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome fission	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005778	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane	SoyBase	N/A	ISS
GO:0005779	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to peroxisomal membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG4186	KOG	Peroxisomal biogenesis protein (peroxin)	JGI		ISS
PTHR12652	Panther	PEROXISOMAL BIOGENESIS FACTOR 11	JGI		ISS
PTHR12652:SF16	Panther		JGI		ISS
PF05648	PFAM	Peroxisomal biogenesis factor 11 (PEX11)	JGI		ISS
UniRef100_B6ZK00	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal biogenesis factor 11 family protein n=1 Tax=Glycine max RepID=B6ZK00_SOYBN	SoyBase	E_val: 5.00E-165	ISS
UniRef100_I1L6Q5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6Q5_SOYBN	SoyBase	E_val: 5.00E-169	ISS

Expression Patterns of Glyma09g40060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g40060

Paralog	Evidence	Comments
Glyma18g46141	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g40060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g264700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g40060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g40060

Limit To All Plant Sequences

>Glyma09g40060.4   sequence type=transcript   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGACAGGCCCAAAACCAAAAAAAGCTTCTTTGTCTCTCGTGCCGATTCTCCACCACTATTCCCTTCACCCCAATCACACTTTCCGCTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTCTTCTTGTTTTATATTTGGGCAAGGCTGAAGCAAGGGACAAAATATGCAGGGCAATACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGTACTGCTCAGAATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAGCTTGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATACGATGATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGGACTCTATCACTTATCAAAGCAGGAATTGATACTGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAGAAAGGTTCTCATGACGTGTCTGTCGTCAAATAATTATATGAATTGGTCAGGAAATGTCGGTTGGTGTGAGCATTGACCAATTTTCATCATAGTTACAATTGTTCTCTAAAACTGTTGTGTAGGGCATCTTTCTATTTTGGTCTTTCAAAATATATGCAACTATAATATGTTGCTCCATAATTTACAAATACATGAATTTGTACCCTAAAAGACATGCAATATCAAATTGGTTCCCCCACTTCCCCTAAATGTTTGTTTCATTTTGTTATCAAAACGGTCCTTTAAATAACATCAAATTTACCCTTGAAGGACAACTAAATGCGTTGATTTTATCATT

>Glyma09g40060.5   sequence type=transcript   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAGTTGGACTGCTATTGAAATTAATAAAATAGGGTACAAGTCTAGAAGATGAAAGAAGAAAAATAATCTAGGGTTCACCACAAGAGTCACTTGTGGTGTTGTGTTGAAGCACACTATTAGTGTAGAAGATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTCTTCTTGTTTTATATTTGGGCAAGGCTGAAGCAAGGGACAAAATATGCAGGGCAATACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGTACTGCTCAGAATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAGCTTGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATACGATGATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGGACTCTATCACTTATCAAAGCAGGAATTGATACTGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGAAGTGTGGAAGAATAGAAAGGTTCTCATGACGTGTCTGTCGTCAAATAATTATATGAATTGGTCAGGAAATGTCGGTTGGTGTGAGCATTGACCAATTTTCATCATAGTTACAATTGTTCTCTAAAACTGTTGTGTAGGGCATCTTTCTATTTTGGTCTTTCAAAATATATGCAACTATAATATGTTGCTCCATAATTTACAAATACATGAATTTGTACCCTAAAAGACATGCAATATCAAATTGGTTCCCCCACTTCCCCTAAATGTTTGTTTCATTTTGTTATCAAAACGGTCCTTTAAATAACATCAAATTTACCCTTGAAGGACAACTAAATGCGTTGATTTTATCATT

Coding sequences of Glyma09g40060

Limit To All Plant Sequences

>Glyma09g40060.3   sequence type=CDS   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTCTTCTTGTTTTATATTTGGGCAAGGCTGAAGCAAGGGACAAAATATGCAGGGCAATACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGTACTGCTCAGAATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAGCTTGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATACGATGATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGGACTCTATCACTTATCAAAGCAGGAATTGATACTGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGA

>Glyma09g40060.4   sequence type=CDS   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTCTTCTTGTTTTATATTTGGGCAAGGCTGAAGCAAGGGACAAAATATGCAGGGCAATACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGTACTGCTCAGAATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAGCTTGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATACGATGATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGGACTCTATCACTTATCAAAGCAGGAATTGATACTGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGA

>Glyma09g40060.5   sequence type=CDS   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACGCTGGATGCAACAAGGGCTGAACTTGGTCTTCTTGTTTTATATTTGGGCAAGGCTGAAGCAAGGGACAAAATATGCAGGGCAATACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGTACTGCTCAGAATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGTTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAGCTTGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATACGATGATGAGCAATACCGTGCCAAACTAAACAAGTCAAATGAGAGGACTCTATCACTTATCAAAGCAGGAATTGATACTGTGGTAGCAGTAGGACTGCTTCAATTGGCACCCAAGACAGTTACTCCTCGCGTAACTGGGGCTTTTGGATTTGTTTCGTCTCTAATATCTTGCTATCAGTTGCTTCCTGCCCCGGTCAAGTCCAAAACTGTGTGA

Predicted protein sequences of Glyma09g40060

Limit To All Plant Sequences

>Glyma09g40060.3   sequence type=predicted peptide   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLDATRAELGLLVLYLGKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKTTSLARKVFRLFKFVNDLHALISPTPQGTPLPLALLGKSKNALLSTFLFLDQFVWLGRTGIYQNKERTELIGRISLYCWLGSSVCATLVELGELGRLSASMKKLEKDLKNKNKYDDEQYRAKLNKSNERTLSLIKAGIDTVVAVGLLQLAPKTVTPRVTGAFGFVSSLISCYQLLPAPVKSKTV*

>Glyma09g40060.4   sequence type=predicted peptide   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLDATRAELGLLVLYLGKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKTTSLARKVFRLFKFVNDLHALISPTPQGTPLPLALLGKSKNALLSTFLFLDQFVWLGRTGIYQNKERTELIGRISLYCWLGSSVCATLVELGELGRLSASMKKLEKDLKNKNKYDDEQYRAKLNKSNERTLSLIKAGIDTVVAVGLLQLAPKTVTPRVTGAFGFVSSLISCYQLLPAPVKSKTV*

>Glyma09g40060.5   sequence type=predicted peptide   gene model=Glyma09g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLDATRAELGLLVLYLGKAEARDKICRAIQYGSKFLSNGEPGTAQNVDKTTSLARKVFRLFKFVNDLHALISPTPQGTPLPLALLGKSKNALLSTFLFLDQFVWLGRTGIYQNKERTELIGRISLYCWLGSSVCATLVELGELGRLSASMKKLEKDLKNKNKYDDEQYRAKLNKSNERTLSLIKAGIDTVVAVGLLQLAPKTVTPRVTGAFGFVSSLISCYQLLPAPVKSKTV*

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