Glyma09g39990 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g39990

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44962508
stop:	44967236
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01880	AT	Annotation by Michelle Graham. TAIR10: 5'-3' exonuclease family protein \| chr1:306558-308991 REVERSE LENGTH=599	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004518	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nuclease activity	SoyBase	N/A	ISS
PTHR11081	Panther	XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY	JGI		ISS
PTHR11081:SF23	Panther		JGI		ISS
PF00752	PFAM	XPG N-terminal domain	JGI		ISS
PF00867	PFAM	XPG I-region	JGI		ISS
UniRef100_A2Q3P8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flap endonuclease GEN-like protein n=2 Tax=Medicago truncatula RepID=A2Q3P8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338BC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338BC8 related cluster n=1 Tax=unknown RepID=UPI0002338BC8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39990

Paralog	Evidence	Comments
Glyma18g46230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g264000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39990

Limit To All Plant Sequences

>Glyma09g39990.1   sequence type=CDS   gene model=Glyma09g39990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTGAAGCCCTATGCGCGCAAGGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCCCGAGAATGCCATCAAGGCCATGCATGTCAGAAAACCCCATCTCAGGCTTACCTTCTTCCGCACCATCAGTCTCTTCTGCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGAGTCCATCGCTGTTGAAATCACGTGCCAGGATTGCGAGATATTTCCGGTGTTCTGGCATTGAATTGGCTAACTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCGCTTGTTTTCAAGTCATGTTCAAGAATGTGCGGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAACTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCCGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAGATGATCATGATATAAATGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCATTTTGTTAAAGCTTTTAGTGAAGATGATATATTGAATAGATTACATGAGATCGGCAAAGGGAATACTTCACAAATTCCCATCTGCATTAAAGTTGAGGACAATGTGGATGGGAACTCCCCAAATAGAAAACTATCTCATTGTTCATTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATATTGTGTCACAAAGGATGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTAGAAAATCAGCATACAATTTTTTTTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTATTTTTCAGCAAGTGATAGCCCACACATTGTATGGGGAAACCCCAATATTGAGATGCTGATTAATTTTTTAAACTTCCATCAGCATTGGGAACCAGCCTACGTTCGACGAATGATGTTTCCTATGATTTCCACCATCTTTTTGAGAGATATGACAACAACTACAGTAGAGACTACGTTGTTTGGGCAATATGAGTTTGATTCCGTAGAACGTGTCAAAATGAGATATGGATATCAATTTTTTGTGGTCAAATGGAAACGTGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGATGCTATAGAGCTTGATGAAATGGTGGATCTACTGGATGACTTTGATGCTCCAGAGATTCATGGAGACGATGGATGCAGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGAGCAGGAACTGAAAAGAATAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACGAAAGTTAAACATCGTCAATCAAAACAAGGAGAAGAGTCATCCAAGAATGCTGATAGTCAAGGCAATGGGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCCGTGAGGCGCCGCCTTTTGTTTGATTAG

Predicted protein sequences of Glyma09g39990

Limit To All Plant Sequences

>Glyma09g39990.1   sequence type=predicted peptide   gene model=Glyma09g39990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQPENAIKAMHVRKPHLRLTFFRTISLFCKFGALPVFIVDGSPSLLKSRARIARYFRCSGIELANLPVPEEGVSAERNRLFSSHVQECAELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGDDHDINGVRGIGLDTALHFVKAFSEDDILNRLHEIGKGNTSQIPICIKVEDNVDGNSPNRKLSHCSFCGHPGSKKDHMKFPCEYCVTKDDEGCQRKPEDFKCDCFSCDMNRKHKEKKRLENQHTIFFHKIAEEPNFPKDEIIDMYLCNDNGYFSASDSPHIVWGNPNIEMLINFLNFHQHWEPAYVRRMMFPMISTIFLRDMTTTTVETTLFGQYEFDSVERVKMRYGYQFFVVKWKRAGVNISCKVPLKESSVQQDDAIELDEMVDLLDDFDAPEIHGDDGCSFLLTDENMDLVGAAFPAEVKRFWQEQELKRIKNSTSRSQENEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGEESSKNADSQGNGGSKMKRKMSSPDKIPKSVRRRLLFD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain