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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G23010 | AT | Annotation by Michelle Graham. TAIR10: UDP-galactose transporter 2 | chr4:12060318-12062486 REVERSE LENGTH=345 | SoyBase | E_val: 0 | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0072334 | GO-bp | Annotation by Michelle Graham. GO Biological Process: UDP-galactose transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0030173 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to Golgi membrane | SoyBase | N/A | ISS |
| GO:0005459 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-galactose transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1582 | KOG | UDP-galactose transporter related protein | JGI | ISS | |
| PTHR10778 | Panther | UDP-GALACTOSE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR10778:SF9 | Panther | UDP-GALACTOSE TRANSPORTER-RELATED | JGI | ISS | |
| PF08449 | PFAM | UAA transporter family | JGI | ISS | |
| UniRef100_A2Q3P6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenosine 3'-phospho 5'-phosphosulfate transporter n=2 Tax=Medicago truncatula RepID=A2Q3P6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L6P6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6P6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g39980 not represented in the dataset |
Glyma09g39980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g46240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g263900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g39980.3 sequence type=transcript gene model=Glyma09g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATGACATAACCACCCTTTAGCCATAGCTTGGTCTTCTCCATGTGCCACAATTTAATACACCTTAGTCCTTTCCCATGAAAATACTATTAATCTCTTTTTCTCTCTCCTTATTTATTCAATTCAATTCCACCTTTGCGTAGAATCAACATTACATTAAACACATATACATAGGAGACAGCTGAGAATGAGATTGTGTGAATGAATGAATGAACACAAGTACTTAAACACACATTACTCTCTCAGTTTCTCTCTCTTCTTACTTCTCTCTCCAAACCTTACATGCACAAAGTTGTGTTTGTGTTCTAATGGAACTTGCTTGCTTAGACTAATCAACCAAGTTTTGCATTTCCAGTAACCAAAACTCTCTTCTTTTTTTTTTCCCCCTTTCTTCTGGGTTGGCAAAGTCAACATGCAAGAACAAGATTTTTTTTAGGCTGGTTGGTGGTTTGAGTTCCAAAAAAACTGACTTTTTGTTGAATAATTTGGGTCGGTGAAGGGGTGTTATGAAGAACGAAGAGCAGGCTCGTAGTTTGTTTGGAATTTCACTCTCTGACAGACCCAGATGGCAGCAATTCCTCATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGAGGAATATGTGTATAACAGGCTCCATTTCAGCTATGGTTGGTACTTCACATTTGTTCAAGGGTTTGTGTACCTGTGTCTGATTTACCTCCAAGGCTTCACAAGCAAGCAAATGGTGAATCCATGGAAAACCTATGTGAAGCTCTCTGCTGTGCTTATGGGTTCTCATGGCCTAACAAAGGGGTCTTTGGCTTTTCTCAACTACCCTGCACAAATCATGTTCAAATCCACAAAGGTTCTGCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAGTATCCGCTGCATGAATATATATCTGCAATACTTCTTGTAGTTGGTTTGATCTTGTTCACACTAGCAGATGCACAGACATCTCCAAATTTCAGTATGATTGGTGTTATTATGATTTCTGGAGCATTGGTCATGGATTCTTTCCTGGGAAATCTTCAAGAAGCAATATTTACCATGAACCCTGAGACCACACAGATGGAGATGCTCTTTTGCTCAACTGTGGTGGGTTTGCCTTTCTTAATCCCACCTATGCTTTTCACAGGAGAATTATTCAAAGCATGGACTTCATGTTCACAGCATCCCTATGTGTATGGAGTGCTAGTCTTTGAAGCAATGGCCACATTCATAGGCCAAGTTTCTGTCCTCTCCCTTATTGCGATCTTTGGTGCTGCCACCACAGCCATGATAACAACGGCAAGAAAGGCAGTGACATTGCTATTGTCGTACTTGATATTTACAAAACCATTAACAGAACAGCATGGGAGTGGACTACTACTCATAGCTATGGGGATCACATTGAAGATGTTGCCTGATAACAAATTCACTAGCACCAAGACCAAGAGGGTCTTAACCTCTTCTGCAAGGGACAATGGTGCAAAATCTACAAGTGATGAAGAGTTGGGGACTCTGCCAAATTCTGGAGAAAATGATGAAAGGAGGCCTTTGGTCTAGCTTAATAATAATGCGTTCTCAATGCAATTTTTATTTTTGAAGTCATTATTTTATAAAAAATCATGATTTCATTTTCGTTTTCATATCATGTGAAAGGAAAAAAAGGAAATAATTTGATGTTCAATTAGCATTAATTGTATACAGGATTATTTTTTTAATGCAAGGCCATAGATTTAAATTTGTTTACTTGAGTTTCTTTCTTCTC
>Glyma09g39980.2 sequence type=CDS gene model=Glyma09g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGATCTAACAGTGAAATTGGTCATGGTTTTGTTTTTTTCTTCTTGTTTTAGCTATGGTTGGTACTTCACATTTGTTCAAGGGTTTGTGTACCTGTGTCTGATTTACCTCCAAGGCTTCACAAGCAAGCAAATGGTGAATCCATGGAAAACCTATGTGAAGCTCTCTGCTGTGCTTATGGGTTCTCATGGCCTAACAAAGGGGTCTTTGGCTTTTCTCAACTACCCTGCACAAATCATGTTCAAATCCACAAAGGTTCTGCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAGTATCCGCTGCATGAATATATATCTGCAATACTTCTTGTAGTTGGTTTGATCTTGTTCACACTAGCAGATGCACAGACATCTCCAAATTTCAGTATGATTGGTGTTATTATGATTTCTGGAGCATTGGTCATGGATTCTTTCCTGGGAAATCTTCAAGAAGCAATATTTACCATGAACCCTGAGACCACACAGATGGAGATGCTCTTTTGCTCAACTGTGGTGGGTTTGCCTTTCTTAATCCCACCTATGCTTTTCACAGGAGAATTATTCAAAGCATGGACTTCATGTTCACAGCATCCCTATGTGTATGGAGTGCTAGTCTTTGAAGCAATGGCCACATTCATAGGCCAAGTTTCTGTCCTCTCCCTTATTGCGATCTTTGGTGCTGCCACCACAGCCATGATAACAACGGCAAGAAAGGCAGTGACATTGCTATTGTCGTACTTGATATTTACAAAACCATTAACAGAACAGCATGGGAGTGGACTACTACTCATAGCTATGGGGATCACATTGAAGATGTTGCCTGATAACAAATTCACTAGCACCAAGACCAAGAGGGTCTTAACCTCTTCTGCAAGGGACAATGGTGCAAAATCTACAAGTGATGAAGAGTTGGGGACTCTGCCAAATTCTGGAGAAAATGATGAAAGGAGGCCTTTGGTCTAG >Glyma09g39980.3 sequence type=CDS gene model=Glyma09g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAACGAAGAGCAGGCTCGTAGTTTGTTTGGAATTTCACTCTCTGACAGACCCAGATGGCAGCAATTCCTCATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGAGGAATATGTGTATAACAGGCTCCATTTCAGCTATGGTTGGTACTTCACATTTGTTCAAGGGTTTGTGTACCTGTGTCTGATTTACCTCCAAGGCTTCACAAGCAAGCAAATGGTGAATCCATGGAAAACCTATGTGAAGCTCTCTGCTGTGCTTATGGGTTCTCATGGCCTAACAAAGGGGTCTTTGGCTTTTCTCAACTACCCTGCACAAATCATGTTCAAATCCACAAAGGTTCTGCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAGTATCCGCTGCATGAATATATATCTGCAATACTTCTTGTAGTTGGTTTGATCTTGTTCACACTAGCAGATGCACAGACATCTCCAAATTTCAGTATGATTGGTGTTATTATGATTTCTGGAGCATTGGTCATGGATTCTTTCCTGGGAAATCTTCAAGAAGCAATATTTACCATGAACCCTGAGACCACACAGATGGAGATGCTCTTTTGCTCAACTGTGGTGGGTTTGCCTTTCTTAATCCCACCTATGCTTTTCACAGGAGAATTATTCAAAGCATGGACTTCATGTTCACAGCATCCCTATGTGTATGGAGTGCTAGTCTTTGAAGCAATGGCCACATTCATAGGCCAAGTTTCTGTCCTCTCCCTTATTGCGATCTTTGGTGCTGCCACCACAGCCATGATAACAACGGCAAGAAAGGCAGTGACATTGCTATTGTCGTACTTGATATTTACAAAACCATTAACAGAACAGCATGGGAGTGGACTACTACTCATAGCTATGGGGATCACATTGAAGATGTTGCCTGATAACAAATTCACTAGCACCAAGACCAAGAGGGTCTTAACCTCTTCTGCAAGGGACAATGGTGCAAAATCTACAAGTGATGAAGAGTTGGGGACTCTGCCAAATTCTGGAGAAAATGATGAAAGGAGGCCTTTGGTCTAG
>Glyma09g39980.2 sequence type=predicted peptide gene model=Glyma09g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDLTVKLVMVLFFSSCFSYGWYFTFVQGFVYLCLIYLQGFTSKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALVMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLIAMGITLKMLPDNKFTSTKTKRVLTSSARDNGAKSTSDEELGTLPNSGENDERRPLV* >Glyma09g39980.3 sequence type=predicted peptide gene model=Glyma09g39980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNEEQARSLFGISLSDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFVQGFVYLCLIYLQGFTSKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALVMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMLFTGELFKAWTSCSQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLIAMGITLKMLPDNKFTSTKTKRVLTSSARDNGAKSTSDEELGTLPNSGENDERRPLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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