Glyma09g39970 - SoyBase

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Report for Sequence Feature Glyma09g39970

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44936402
stop:	44944010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01920	AT	Annotation by Michelle Graham. TAIR10: SET domain-containing protein \| chr1:316204-319507 FORWARD LENGTH=547	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1337	KOG	N-methyltransferase	JGI		ISS
PTHR13271	Panther	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	JGI		ISS
UniRef100_G7L2K0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7L2K0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N3L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3L2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39970

Paralog	Evidence	Comments
Glyma18g46250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g263800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39970

Limit To All Plant Sequences

>Glyma09g39970.2   sequence type=CDS   gene model=Glyma09g39970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCTCAGAAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTACAGGCAAATGGGGTGGAGCTACGAGGTTGCAAGATCAAGTGGTGTGATTCCAAACGAGGGTTTGGCATCTTTTCTGATAAAGATGTTTCTGATGGGGTTATGTTGGTTGTTCCACTAGATTTAGCAATTACTCCAATGAGGGTGTTGCAAGATCCTCTTCTAGGACCAGCATGTAGAGCAATGTTTGAAGAAGGAGATGTAGACGACAGGTTATTAATGATGCTGTTACTGACTGTGGAGCGTTTGCGTAAGAATTCTCTATGGAAGCCGTATCTTGATATACTTCCAACCACTTTTGGGAATCCACTTTGGTTTAGTGATGATGAACTTCAAGAGCTAAGAGGAACAACATTATATCGTGCAACTGAGTTGCAGAAGAAAAGCCTGCTTTCTTTGTATGAATCTAAAGTGAAGGATATAGTGAAGAAACTTTTGACTCTTGATGGAAATTCAGAGATTGAGGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGCCGTGCTTTGAACATTCCAATGCCTCGTTCTTATGTATTTCCAGAAATGCAAGATGCTCATGACATTTGCATTCGAGAAGCTGATGAAAAAAGAAGCCATGTTAAGAAATCTGACAATCAGACCAAAGAAGGGACATGTAACCCAATGACAGGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGAACTGGTTTAGCATCGGGAGTTCCTTTCTCCATGTATCTTATCTCTGCTGCTCAAAGTCCCTTGCAGATTGATCAAGAAATCTACATTAGTTATGGAAACAAGGGAAATGAGGAACTTCTATATCTGTATGGTTTTGTCATTGATGATAACACAGATGACTATCTCATGGTCCACTATCCAGCAGAAGCAATTAATACAATTTCTTTTTCTGAGTCCAAAACCCAGCTTCTTGAAGTGCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAACTTCATTGGATAATGGATTTTTTCCATTAAACACCCAAAACAGTGAAGAAAATAACAAGTCCAAAGCTGACAAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGTTAACAAGCTGGTGTTTCCTGAGAAATTTATGACTACTTTGAGGACCATAGCCATGCAAGAAGATGAGGTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGCTGGACCTGAAAGGGAGAGGCAACTATCAGATACAGATGTCCAATCAGCAGTGTGGGAGGTCTGTGGTGATTCTGGAGCTTTACAATCGCTTGTTGATCTTCTTCATGTGAAGATGATGGATCTTGAAGAGAGTTCTGGAACAGAGGAAAATGACCTTGATTTTCTCAAGAAAACCCTTATTATTGATAACCATGAAGATAGCAAACAATGCACGAGCAATTTAAGCACAAAGTCAAATGACTTAGAGGAACCAAAGTTGATGACTAGAAACAAGTGGTCTGCTATAGTATATAGGTGTGGCCAGAAGCAGCTAACTCGGTTATTCTTAGAAGAAGCAGAACATGCTTTGCAGTTATCACTGGGTGAAGAAAAGGTCACTTCTCCCTGTTAA

Predicted protein sequences of Glyma09g39970

Limit To All Plant Sequences

>Glyma09g39970.2   sequence type=predicted peptide   gene model=Glyma09g39970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSEEAKLETFMQWLQANGVELRGCKIKWCDSKRGFGIFSDKDVSDGVMLVVPLDLAITPMRVLQDPLLGPACRAMFEEGDVDDRLLMMLLLTVERLRKNSLWKPYLDILPTTFGNPLWFSDDELQELRGTTLYRATELQKKSLLSLYESKVKDIVKKLLTLDGNSEIEVCFEDFLWANSVFWSRALNIPMPRSYVFPEMQDAHDICIREADEKRSHVKKSDNQTKEGTCNPMTGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLASGVPFSMYLISAAQSPLQIDQEIYISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPAEAINTISFSESKTQLLEVQKAEMRCLLPKTSLDNGFFPLNTQNSEENNKSKADKVCNYSWSGQRKMPSYVNKLVFPEKFMTTLRTIAMQEDEVFKVSSMLEELAGPERERQLSDTDVQSAVWEVCGDSGALQSLVDLLHVKMMDLEESSGTEENDLDFLKKTLIIDNHEDSKQCTSNLSTKSNDLEEPKLMTRNKWSAIVYRCGQKQLTRLFLEEAEHALQLSLGEEKVTSPC*

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