Glyma09g39930 - SoyBase

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Report for Sequence Feature Glyma09g39930

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44914177
stop:	44915067
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52790	AT	Annotation by Michelle Graham. TAIR10: peptidoglycan-binding LysM domain-containing protein \| chr3:19566004-19566333 REVERSE LENGTH=109	SoyBase	E_val: 1.00E-31	ISS
GO:0016998	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01476	PFAM	LysM domain	JGI		ISS
UniRef100_B6TQ19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LysM domain containing protein n=1 Tax=Zea mays RepID=B6TQ19_MAIZE	SoyBase	E_val: 3.00E-29	ISS
UniRef100_I1L6P2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6P2_SOYBN	SoyBase	E_val: 5.00E-78	ISS

Expression Patterns of Glyma09g39930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39930

Paralog	Evidence	Comments
Glyma18g46280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g263500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39930

Limit To All Plant Sequences

>Glyma09g39930.1   sequence type=CDS   gene model=Glyma09g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCAATTCCAAAAGGGCACCGATCTCAAGTTCAAAAGCCATAGCTGATGCAGCCTCATGGTGCTGTGCATGTTTTCTTGTGTCCCTCTTATTGCTATGCATATTCAGAGACATCTCTGCCCTTCATGATGATCAAGGGAACTTGATGATGAGAAGCAGCCATGTCTTGTCCAAGCCATCATGTGATGAAATATATGTGGTTGGAGAAGGTGAGACACTTCATACAATCAGTGACAAGTGTGGTGATCCCTTTATTGTGGAAAAGAACCCTCATATCCATGACCCTGATGATGTCTTCCCAGGACTTGTTCTCAAGATTACACGCTCACAAACAACATAG

Predicted protein sequences of Glyma09g39930

Limit To All Plant Sequences

>Glyma09g39930.1   sequence type=predicted peptide   gene model=Glyma09g39930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFNSKRAPISSSKAIADAASWCCACFLVSLLLLCIFRDISALHDDQGNLMMRSSHVLSKPSCDEIYVVGEGETLHTISDKCGDPFIVEKNPHIHDPDDVFPGLVLKITRSQTT*

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