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Report for Sequence Feature Glyma09g39740

Feature Type:gene_model
Chromosome:Gm09
Start:44769605
stop:44772080
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g39740
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61230AT Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein | chr3:22664601-22665503 REVERSE LENGTH=213 SoyBaseE_val: 2.00E-104ISS
GO:0051017GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
KOG1700 KOG Regulatory protein MLP and related LIM proteins JGI ISS
PTHR24206Panther FAMILY NOT NAMED JGI ISS
PTHR24206:SF106Panther JGI ISS
PF00412PFAM LIM domain JGI ISS
UniRef100_G7L3J0UniRef Annotation by Michelle Graham. Most informative UniRef hit: LIM domain protein 2b n=1 Tax=Medicago truncatula RepID=G7L3J0_MEDTR SoyBaseE_val: 7.00E-114ISS
UniRef100_I1L6M1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6M1_SOYBN SoyBaseE_val: 5.00E-161ISS

Expression Patterns of Glyma09g39740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g39740 not represented in the dataset
Glyma09g39740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39740
ParalogEvidenceComments
Glyma18g46460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39740 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g261800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g39740
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g39740
>Glyma09g39740.1   sequence type=CDS   gene model=Glyma09g39740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCAGTCACTGCAAGGGGTGCCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAACTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAAAATGAGACGCATAAGACCCCCAACAGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTTGAAGGGGAATGCTATCACAAGAATTGCTTCAGATGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTCCTCTACTGCAGGCATCATTTCCAACAACTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAATCTGCTAACCACAAGAAGAATGCCACACAATCTCCTGCTGAACCTGCTGAACCTGCAGCTGAAGGAGAAGAAGAGCCTCCAAAGCCAGAAGAATCTGATTCTGAGAAACACACAGAAGAAAAGCCTCAAAATGAAGCATAG
Predicted protein sequences of Glyma09g39740
>Glyma09g39740.1   sequence type=predicted peptide   gene model=Glyma09g39740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFTGTTDKCKACDKTVYVVDMLTLEGIPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNETHKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQSANHKKNATQSPAEPAEPAAEGEEEPPKPEESDSEKHTEEKPQNEA*






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