SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g39603

Feature Type:gene_model
Chromosome:Gm09
Start:44641399
stop:44648228
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g39603
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45880AT Annotation by Michelle Graham. TAIR10: beta-amylase 7 | chr2:18878674-18881824 REVERSE LENGTH=691 SoyBaseE_val: 0ISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0048831GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of shoot development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016161GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-amylase activity SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
PF01373PFAM Glycosyl hydrolase family 14 JGI ISS
PF05687PFAM Plant protein of unknown function (DUF822) JGI ISS
UniRef100_J7I638UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-amylase 6 n=1 Tax=Citrus trifoliata RepID=J7I638_PONTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338A6CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338A6C related cluster n=1 Tax=unknown RepID=UPI0002338A6C SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g39603
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g39603 not represented in the dataset
Glyma09g39603 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39603
ParalogEvidenceComments
Glyma18g46630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39603 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g260100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g39603
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g39603
>Glyma09g39603.1   sequence type=CDS   gene model=Glyma09g39603   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTGATATGCAGAGGCTTGTTGGAACCAGTGAGGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGATGAGGATGATGATTATGAGGAAAATGGAGGTGAACAGGGGAATGCTTCAGTATCAGGGATGGTAGAGATTGATGATGGGAATGGGATAGGAACTGCCACTGGTGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAGTAGGCACCCCGGGTGGAGGTACTCGAAGATCTAGGCCGCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAAAGGCGCCGCAGGGCCATCACTGCAAGGATCTTGGCAGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGTTCTACTTTCCCATCAAGATCTCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTGTCACTTCATCATCTTCCCTTGCGGCTTCACAACAGACTCCATCTGCTTCTCTCAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTATAATGCATGTCAAACAAAAGGTGTTTTTATGCCTACTCCGTCTCCTTATGATCTATCCTCAAGTTCCCGGTCTCAAACATCTATGGTGGGGGATGGAGAAGCACAAAGAGACAATCGTCCTCTGATTGCTGGTTCAATGGATAATGCTGATGATAAGCAGATTGCTGACTTGCCCCCCAGATTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTATCGTTGGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCCGATGGTCTACTAAAGCAGCTAAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAGCTTAAGCTTAAGCTGCAGGTTGTAATTTCATTTCATGAATGTGGAGGCAATTTTGGCGATGATGTTTGTATTCCACTACCGCATTGGGTTGCTGAAATTGGTCGGAGCAATCCTGACATTTTTTTCACTGATAAAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGCCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAATACTTTGAGGATGGGTTTATCTCCATGATTGAAATTGGACTGGGTCCATGTGGAGAGTTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTGTTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGCCATTCTATTTGGGCTAGAGGGCCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGCATTGCTGCAAAGTTATCGGGTATTTATTGGTGGTACAAGACTGCAAGTCATGCTGCTGAATTAACTGCTGGGTATTATAACCCATGCAATCGTGATGGTTATGCTGCAATTATGACAATGTTAAAGACAATTGGAGTCAGCTTAAACATTCCTTGTGTTGACTTGCACACATTTAACCAACAACATGAGGGCTTTCCAGAGACATTTGCAGATCCTGAGGGAATAGTCTGGCAATTGTTGAATGCCGGGTGGGATGTTGACCTACCAGTTACCGGTCAGAATGGATTTCCTTGCCTAAACAGAGTTGGCTATAACAAGGTTTTGGATAATGCCAAGCCCATGAATGATCCAGATGGAAGGCTCTTTTCATCCTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACAACAAAACTTTGTAGAGTTTGAACGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTACAGGTATAA
Predicted protein sequences of Glyma09g39603
>Glyma09g39603.1   sequence type=predicted peptide   gene model=Glyma09g39603   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDMQRLVGTSEDDEEMGMDVKDEDDEDDDYEENGGEQGNASVSGMVEIDDGNGIGTATGDNRFQQHQQFQEQVGTPGGGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGSTFPSRSQGQKPAGGNSTIVTSSSSLAASQQTPSASLRGVASGYRSPLEYNACQTKGVFMPTPSPYDLSSSSRSQTSMVGDGEAQRDNRPLIAGSMDNADDKQIADLPPRLPERDLAGTPYVPVYVMLSLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVISFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDKEGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGFISMIEIGLGPCGELRYPSCPVKHGWRYPGVGEFQCYDQYMLKSLRKAAEVRGHSIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKTIGVSLNIPCVDLHTFNQQHEGFPETFADPEGIVWQLLNAGWDVDLPVTGQNGFPCLNRVGYNKVLDNAKPMNDPDGRLFSSFTYLRLSPLLMEQQNFVEFERFVKRMHGEAVLDLQV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo