Glyma09g39480 - SoyBase

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Report for Sequence Feature Glyma09g39480

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44544871
stop:	44553912
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61415	AT	Annotation by Michelle Graham. TAIR10: SKP1-like 21 \| chr3:22723052-22725577 REVERSE LENGTH=349	SoyBase	E_val: 1.00E-160	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
KOG1724	KOG	SCF ubiquitin ligase, Skp1 component	JGI		ISS
PTHR11165	Panther	SKP1	JGI		ISS
PTHR11165:SF5	Panther	SKP1-RELATED	JGI		ISS
PF01466	PFAM	Skp1 family, dimerisation domain	JGI		ISS
PF03931	PFAM	Skp1 family, tetramerisation domain	JGI		ISS
UniRef100_G7LBR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SKP1-like protein n=2 Tax=Medicago truncatula RepID=G7LBR1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L6J4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6J4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39480

Paralog	Evidence	Comments
Glyma18g46780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g258900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g39480

Limit To All Plant Sequences

>Glyma09g39480.2   sequence type=transcript   gene model=Glyma09g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGAGTTATCTAAAGTTGTATTAGATTAATTATTTGATTCAATAAATTAAAAAAAAATAGATGTTTTTGACCCAAAAAAAAGAAGAAGAAAAATCCACTTCATTTTCATTTTCACTTCCATTTTCGGATTTTCCATCCGAAATCAAAATCTCTTCGTTCTGTCTCTCTCTTCTTTCTCTCTCTTCCATTCTATCTATCCATTCCTGTCCATCGCCGACAACCGCCAATTCCCTCCATTTCAAAGCAAACCCCTTTCTCTTCTCGGCTGTTGCTTTGAACTTGAAAGGTGCTGAACTATTTTCCATTCTCTTTTGCAAATTTACATCTGTTCTGCAAATACTTTCTTCACGGACCTTGCATTTGAGAAATGTTGCTGGAGCTTCTTGATCCTGATTGCAGAATACCTTTGATTAGTGGATGTATTACCTGGCTTTCTGGAGTTGAAATTTGAATTTCCACCTCAGCAATATTGCTTGCATCACATAGAAACTTTCAATATCAATTGATTTTACTTCTCAAATTGGTTTAAGATGTCAGAAATTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCCGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTCTGATTTGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCGACGTTGAGCTTAATTCTTGATTATTGTCATTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGAAAGTCTTATGATGAGAAATTCATTAGGATGGACACAAAGCGGCTATGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGCGAGATATTTCATCTGCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTAAAGAATGTTGAAGCTGAAGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATAAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGAAAAAAAGAGCAACAGCAGAAGAACTCTTCTCTGAAGGAAGCTTCTGAAGTGAATAAGGAAGTAAATGGTCAAAATATCAGACACCAAAGTGCTGAAGCTGATAGAATTGCTGAGACCTCAAATTCACATACAGAAGACGTTTTTGCTCATAGAGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCATTAAAGGAAAAAATTGACAGGTGGGGCTGCATTGTAAATGCATGTCTGGTAATGCATTTTCAGGAGGAATGATTATTCTTTTTAAATCTCTCAGGAAATTGTGAAAAGAAAACAATTATTTCTCCAAATAGGCTTGAACCAAAGACACTAATTATATTGTTTACACTATGCTGTTTCTAAAATCTATTTTTTATTTTTTTTGTGGATGGCTATCATTATCATTATCGTAGTTGCAGTGGCAGATCACTAGCTTTTCTTCTCATTAGTGATCAGTAGCATTGAATATATTTTATGTGGAGTATAGCATATGCAGAGGACAAGGCATCAGAATGATTGAATTCTTCCTTCTACAAATTGTACTTTTTGAGTCATCTATTGCTGGTTGAATATGGCATGAAGTGCTTGCGTACTTGTGTTTATCACAGAGAGGGAGATATGGCAATGGCAATTTATTGGATTTCACACCTTTTTGGAGAATGATAAATTTAGGAAGTGGAAGATTTTGCCCGCCGATTGAATTCTGACTGGCCAGAAAGGATGCAAGAACTTCTATCATCAGGACAAGAAAGGAAGACAATACTTTTTACTCCCAACGGAAATAGTTTTCTGAGGCGAAACGCTTGACTTGACTTGGATGGATTGGAAATGAATGCGTAAAAGATTGCAAGCCTACCCAGATGACCAGTGGCTTGAACAATTTTGAGAGATACTGACACATGCTAGAAAATTGTTGCATGTCAGTTTTTTTTTTAATTTTTTTCCCCTTACTGTTTAAATTTATTCTTTTTTGGTTCATTGTTGGTGTTTAGCTCCGGTGCTATTTGCTGCTGGGGGCTTTCTCTTGTACTTATAGGAAAGAAATAAAAAAAGGTTCTGAGCTTGTGTGGATGATATCTTTTTTGTGTGAATTTGCTTTTGGTTTGTTCTTCGCTCAAGGCTTGATTTAAAGGTTCATTTGTACCTTATGATTTATGTAGTTTTA

Coding sequences of Glyma09g39480

Limit To All Plant Sequences

>Glyma09g39480.1   sequence type=CDS   gene model=Glyma09g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAATTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCCGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTCTGATTTGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCGACGTTGAGCTTAATTCTTGATTATTGTCATTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGAAAGTCTTATGATGAGAAATTCATTAGGATGGACACAAAGCGGCTATGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGCGAGATATTTCATCTGCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTAAAGAATGTTGAAGCTGAAGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATAAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGAAAAAAAGAGCAACAGCAGAAGAACTCTTCTCTGAAGGAAGCTTCTGAAGTGAATAAGGAAGTAAATGGTCAAAATATCAGACACCAAAGTGCTGAAGCTGATAGAATTGCTGAGACCTCAAATTCACATACAGAAGACGTTTTTGCTCATAGAGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCATTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCCGATTGAATTCTGACTGGCCAGAAAGGATGCAAGAACTTCTATCATCAGGACAAGAAAGGAAGACAATACTTTTTACTCCCAACGGAAATAGTTTTCTGAGGCGAAACGCTTGA

>Glyma09g39480.2   sequence type=CDS   gene model=Glyma09g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAATTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCCGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTCTGATTTGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCGACGTTGAGCTTAATTCTTGATTATTGTCATTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGAAAGTCTTATGATGAGAAATTCATTAGGATGGACACAAAGCGGCTATGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGCGAGATATTTCATCTGCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTAAAGAATGTTGAAGCTGAAGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATAAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGAAAAAAAGAGCAACAGCAGAAGAACTCTTCTCTGAAGGAAGCTTCTGAAGTGAATAAGGAAGTAAATGGTCAAAATATCAGACACCAAAGTGCTGAAGCTGATAGAATTGCTGAGACCTCAAATTCACATACAGAAGACGTTTTTGCTCATAGAGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCATTAAAGGAAAAAATTGACAGGTGGGGCTGCATTGTAAATGCATGTCTGGTAATGCATTTTCAGGAGGAATGA

Predicted protein sequences of Glyma09g39480

Limit To All Plant Sequences

>Glyma09g39480.1   sequence type=predicted peptide   gene model=Glyma09g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKNCAICLPQRVSPATLSLILDYCHFHQVPGRSNKERKSYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKNVEAEEEHVDERSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQQKNSSLKEASEVNKEVNGQNIRHQSAEADRIAETSNSHTEDVFAHREFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTILFTPNGNSFLRRNA*

>Glyma09g39480.2   sequence type=predicted peptide   gene model=Glyma09g39480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKNCAICLPQRVSPATLSLILDYCHFHQVPGRSNKERKSYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKNVEAEEEHVDERSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQQKNSSLKEASEVNKEVNGQNIRHQSAEADRIAETSNSHTEDVFAHREFDDGDIDDGIDPALKEKIDRWGCIVNACLVMHFQEE*

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