Report for Sequence Feature Glyma09g39420
Feature Type: gene_model
Chromosome: Gm09
Start: 44512972
stop: 44515732
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g39420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G46000 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208
SoyBase E_val: 2.00E-48 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1L6I9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6I9_SOYBN
SoyBase E_val: 3.00E-178 ISS
UniRef100_Q8H087 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8H087_ORYSJ
SoyBase E_val: 2.00E-42 ISS
Expression Patterns of Glyma09g39420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g39420
Paralog Evidence Comments
Glyma18g46850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g39420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g258300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g39420
Coding sequences of Glyma09g39420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g39420.1 sequence type=CDS gene model=Glyma09g39420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTATGCCAGTTGATAGCCTATGCAGCAACAAAATCACAAACTCAAAGCCTAAACACATTTCATTCCCAAAAAACTCACTCACGAGAGTGCATCATTCCTCATTTGATCCTCTCTTCCCCCATGACCTTCCAACCAGTCCCCACTCTCCTTCTCCTTCTCCTCCTCGCGTCCGCAAATTCCCATTTTGCCCTCGCCGGAAAGCGCAAGGTTCACATCCCCGACGAGTTGGACGACGTGTTCGACGACGAGGAGGACGACGCGTGGCGAGAATGGGGCAAGAAACCCGAACCCCCTTTCCCTTCCTCCGATATCTCCAAGCTCGATCCCTCGCAGATCCAGCAGGAGATGATGAAGCGCCACGCCGGACCCGTCATCGGATTCGTCAAGCTCCGGCCAGGGTCTCGCCGTACTCCGGACATGGTAGCTGAATTTGCAATGAAATGGACACATGTTCTGAGAACTGGAGCTGTTGGAGTAAGGTTTATGGGTGTTGATCTGAATACAATTATGTTTAACTTGGAAAGCATCAAAGACTTGGAAGAGTTGAAGGAATTTGTCTTGGACCAATCAGAGGCATATGAGATCAAAATGGGGGATCAATTTTTTCGAAGATCTGGAGATCCACCTCTTGATGAAGTTATTGAGAAGTACAATAGTGAGAAAGCCAAAGCAGATAATGCTGATTCAGAGGAAATTGATCCGAATGTTAAAACAGAGTTGTAA
Predicted protein sequences of Glyma09g39420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g39420.1 sequence type=predicted peptide gene model=Glyma09g39420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVCQLIAYAATKSQTQSLNTFHSQKTHSRECIIPHLILSSPMTFQPVPTLLLLLLLASANSHFALAGKRKVHIPDELDDVFDDEEDDAWREWGKKPEPPFPSSDISKLDPSQIQQEMMKRHAGPVIGFVKLRPGSRRTPDMVAEFAMKWTHVLRTGAVGVRFMGVDLNTIMFNLESIKDLEELKEFVLDQSEAYEIKMGDQFFRRSGDPPLDEVIEKYNSEKAKADNADSEEIDPNVKTEL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
