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Report for Sequence Feature Glyma09g39390

Feature Type:gene_model
Chromosome:Gm09
Start:44491335
stop:44495207
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g39390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61440AT Annotation by Michelle Graham. TAIR10: cysteine synthase C1 | chr3:22735885-22737792 FORWARD LENGTH=368 SoyBaseE_val: 0ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006535GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019499GO-bp Annotation by Michelle Graham. GO Biological Process: cyanide metabolic process SoyBaseN/AISS
GO:0019500GO-bp Annotation by Michelle Graham. GO Biological Process: cyanide catabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051410GO-bp Annotation by Michelle Graham. GO Biological Process: detoxification of nitrogen compound SoyBaseN/AISS
GO:0080147GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004124GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine synthase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
GO:0050017GO-mf Annotation by Michelle Graham. GO Molecular Function: L-3-cyanoalanine synthase activity SoyBaseN/AISS
KOG1252 KOG Cystathionine beta-synthase and related enzymes JGI ISS
PTHR10314Panther PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY JGI ISS
PTHR10314:SF8Panther THREONINE DEHYDRATASE JGI ISS
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI ISS
UniRef100_I1L6I6UniRef Annotation by Michelle Graham. Best UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=I1L6I6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1L6I6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=I1L6I6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g39390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39390
ParalogEvidenceComments
Glyma18g46920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g258000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g39390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma09g39390
>Glyma09g39390.2   sequence type=transcript   gene model=Glyma09g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATTTAGTCTCCCACGGTAGAATTGGTCAATGAATTGAACTTAGCCATAATTCCCTGACATGAATCAAATCTGGTCATCCATTGATACCTCTCAAAACCAAATTGGAATCTTGCTTTGCTTGGACCACAATAATGCCTAATCAAATTGCATAATTTAATTATCAGTGCCTAGTAACCAACTAATCATATATATGTATATATACATTGCATAGCCTTGGGGTATTCAAAATCATCAATTTTCAATTCATGGCTTCCCTCATGAGCACCATCCTCAAGCAAAGGTCTTGTTCTTCTTCTTCACATGCTGGGAGGCTGTTGTTCTCCACAACAACAGCAGCCATTGTTGATTCCCCTTCACTTGCTCAGAGAATCAGAGATTTGCCTAAGGACCTTCCTGGAACCAACATCAAGAAGCATGTTTCTCAGCTCATTGGGAGGACTCCACTGGTTTATCTTAACAAAGTCACCGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTCCTGGAAAGACAACTTTGATAGAGCCTACATCAGGCAATATGGGTATCAGCATGGCATTTATGGCCGCCATGAAGGGATATAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGCGTTTGGAGCTGAATTAATCCTCACTGATCCAGCCAAAGGAATGGGAGGAACAGTAAAGAAGGCTTATGAACTTTTGGAAAACACACCAAATGCTCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCAAAAATCCTAATGTTAAGATATATGGAGTGGAGCCAAGTGAAAGCAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCATATAACTGGCAATGGGGTTGGATTCAAACCAGACATATTGGACCTGGATGTTATGGAAAAAGTTCTTGAAGTTAGCAGCGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCACTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGGTAAGAACAGTTTTCCTTGAAACAACTCTAAGCTAAAGGCTTAGCCTGATGTATAAATTCTCAAGACACAACAACACTT
Coding sequences of Glyma09g39390
>Glyma09g39390.1   sequence type=CDS   gene model=Glyma09g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTCATGAGCACCATCCTCAAGCAAAGGTCTTGTTCTTCTTCTTCACATGCTGGGAGGCTGTTGTTCTCCACAACAACAGCAGCCATTGTTGATTCCCCTTCACTTGCTCAGAGAATCAGAGATTTGCCTAAGGACCTTCCTGGAACCAACATCAAGAAGCATGTTTCTCAGCTCATTGGGAGGACTCCACTGGTTTATCTTAACAAAGTCACCGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTCCTGGAAAGACAACTTTGATAGAGCCTACATCAGGCAATATGGGTATCAGCATGGCATTTATGGCCGCCATGAAGGGATATAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGCGTTTGGAGCTGAATTAATCCTCACTGATCCAGCCAAAGGAATGGGAGGAACAGTAAAGAAGGCTTATGAACTTTTGGAAAACACACCAAATGCTCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCAAAAATCCTAATGTTAAGATATATGGAGTGGAGCCAAGTGAAAGCAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCATATAACTGGCAATGGGGTTGGATTCAAACCAGACATATTGGACCTGGATGTTATGGAAAAAGTTCTTGAAGTTAGCAGCGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCACTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGACTGTTCATCCAAGCTTCGGTGAACGATACCTATCATCTGTTCTGTTCCAAGAGCTTCGTCAAGAAGCTGAAAACATGCAGCCAGTAGCAGTTGATTAA

>Glyma09g39390.2   sequence type=CDS   gene model=Glyma09g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTCATGAGCACCATCCTCAAGCAAAGGTCTTGTTCTTCTTCTTCACATGCTGGGAGGCTGTTGTTCTCCACAACAACAGCAGCCATTGTTGATTCCCCTTCACTTGCTCAGAGAATCAGAGATTTGCCTAAGGACCTTCCTGGAACCAACATCAAGAAGCATGTTTCTCAGCTCATTGGGAGGACTCCACTGGTTTATCTTAACAAAGTCACCGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTCCTGGAAAGACAACTTTGATAGAGCCTACATCAGGCAATATGGGTATCAGCATGGCATTTATGGCCGCCATGAAGGGATATAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGCGTTTGGAGCTGAATTAATCCTCACTGATCCAGCCAAAGGAATGGGAGGAACAGTAAAGAAGGCTTATGAACTTTTGGAAAACACACCAAATGCTCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCAAAAATCCTAATGTTAAGATATATGGAGTGGAGCCAAGTGAAAGCAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCATATAACTGGCAATGGGGTTGGATTCAAACCAGACATATTGGACCTGGATGTTATGGAAAAAGTTCTTGAAGTTAGCAGCGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCACTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGGTAAGAACAGTTTTCCTTGAAACAACTCTAAGCTAA
Predicted protein sequences of Glyma09g39390
>Glyma09g39390.1   sequence type=predicted peptide   gene model=Glyma09g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLMSTILKQRSCSSSSHAGRLLFSTTTAAIVDSPSLAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLSSVLFQELRQEAENMQPVAVD*

>Glyma09g39390.2   sequence type=predicted peptide   gene model=Glyma09g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLMSTILKQRSCSSSSHAGRLLFSTTTAAIVDSPSLAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVVRTVFLETTLS*






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