Glyma09g39380 - SoyBase

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Report for Sequence Feature Glyma09g39380

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44474534
stop:	44486746
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46020	AT	Annotation by Michelle Graham. TAIR10: transcription regulatory protein SNF2, putative \| chr2:18923304-18931769 FORWARD LENGTH=2193	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010199	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ boundary specification between lateral organs and the meristem	SoyBase	N/A	ISS
GO:0040029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic	SoyBase	N/A	ISS
GO:0043044	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP-dependent chromatin remodeling	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
KOG0386	KOG	Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily)	JGI		ISS
PTHR10799	Panther	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	JGI		ISS
PTHR10799:SF92	Panther	SNF2 FAMILY CHROMODOMAIN-HELICASE-RELATED	JGI		ISS
PF00176	PFAM	SNF2 family N-terminal domain	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF08880	PFAM	QLQ	JGI		ISS
UniRef100_G7L5N7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent helicase BRM n=2 Tax=Medicago truncatula RepID=G7L5N7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338A65	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338A65 related cluster n=1 Tax=unknown RepID=UPI0002338A65	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39380

Paralog	Evidence	Comments
Glyma18g46930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g257900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39380

Limit To All Plant Sequences

>Glyma09g39380.1   sequence type=CDS   gene model=Glyma09g39380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCTGGCGGAGGTGCCGGTGGTGGGCCCGGCCGGAATCCGGCGGGGCGGGCGGCATCGACGTCGTCAGCGGCTGCGTCGCCGTCTTCTTCGTCATCGGCGGCCTCACATTTGGAGTCACTGAAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGATGGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAGTGAAGCATTTTTGGCATATCAAGCTGGTCTTCAAGGAGTATTTGGGAGTAACAATTTCCCATCGAGTTCCATGCAGTTACCTCAGCAATCTCGAAAATTTGTTGATTTAGCTCAGCATGGCTCCAACCAGATTCAAGGTGTTGAGCAGCAAATGCTAAATCCTGCACAAGCAGCATACTTTCAATATGCTCTGCAGGCTTCGCAACAAAAGTCTGCTTTGGAAATGCAGTCACAGCAGCAACCGAAAATGGGAATGCTGGGCCCTTCATCTGTAAAGGATCAGGAAATGCGAATGGGAAATTTGAAAATGCAGGATCTTATGTCCATGCCGGCAGTGAATCAGGCCCAAGCATCATCGTCTAGAAATTCATCTGAACATTTTACTCGTGGGGAAAAGCGGGTAGAGCAAGGGCAGCAGCTAGCACCTGATCAGAAGAGTGAAGGAAATTCTTCAAGCCAGGGTGCTGTTGGAAACTTAATGTCGGGAAATATTATAAGACCTGTGCAAGATCTGGCAACTCAGCAGAGCATCCCAAACTCTATGAACAACCAGATTGCAATGGCTGCTCAATTGCGGGCTATGCAGGCATGGGCACATGAACGAAATATTGATCTATCACATCCTGCAAATGCTAACTTAATGGCTCAGCTCATTCCACTGATGCAATCCAGGATGGTTCAACAACCAAAGGCAAATGATACTAACTTAGGTTCACTGTCATCACCTATCCCTGTTTCAAACCAGCAGGTTACTTCTCCAGCAGTTGCAAGTGAGAGTTCAGCACATGCTCATTCATCTAGTGATGTGTCTGCACAATCAGGTTCTGCAAAGGCCAGGCAGACGGCTCCACCCAGCCATTTGAGCCCACCAATTAGTGCCGGTATAGCCAGTAGCTCTAGTGACATGGCAGCGCTGCAATTTAGTCTTCATGGCAGAGACGCTCAAGGATCTTTGAAGCAATCAGTTCTAACTGTAAATGGAATGCCTTCTGTGCATCCACAGCAGTCCTCTGCAAACATGAACTTAGGTGCAGATCATCCTCTGAATGCAAAATCTTCTTCATCTGGTTCAGAACCAGTGAAAATGCAGTACATCAGGCAATTAAACCAATCTGCTTCTCAGGCTGGAGGTCTGACAAATGAAGGTGGATCAGGAAATCACACCAAAACTCAGGGGGGACCATCTCAGATGCCTCAACAACGAAATGGTTTTACCAAACAACAGCTTCATGTTCTTAAGGCACAAATACTAGCATTTAGGCGTTTGAAGAAAGCAGAAGGTGCACTCCCCCAAGAACTTCTTCGCGCCATCATTCCACCACCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGAAGGAGCACAAAATCAAGAGAAATCTGCTGGAAATATTGTGGCAGAACAACCGAGGCAGAATGAGGTCAATGCCAAAGAGTCGCAGCCTATCTCATCCATTAATGGAAAGATCTCTTCAAAGCAGGAAGTCTTTGTCAGAGATGAGAACTCCCCTGTAACAGCAGTTCATTTGCAACCCACACCTCCTGTGACAAAGGAATCTGCTGGACAGGAAGAGCAGCAGTCTGTTGCATGCGCTCCTAAGTCAGATCAGGAAAGTGAACATGGAATTGGCAGAAATGAGTTAGTATTAGATAAGGGAAAAGCTGTTGCTGCTCCCCAGGCTTCTGTAACCGACGCGATGCAACTCAATAAACCCGCACAAGCAAGCACTGTTTCCCAACCAAAGGATGTGGGGTCCACCAGAAAATATCATGGACCCCTATTTGATTTTCCTTTCTTCACTAGGAAACATGATTCCTTTGGGTCATCAATGATGATAAACAACAATAATTTGTCATTGGCATATGATGTGAAAGAGCTTCTTTTTGAGGAAGGCATGGAGGTCCTTGGCAAGAGAAGAACGGAGAGTTTAAAGAAGATTGAAGGTTTACTGGCAGTAAACTTGGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTGAGGTTGCAAATTGAAGAGAAAAAACTTCGCCTTTTAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTAGGCTGTGTGAACGTCAGCGTATGGAACTTGCTAGGCAAGTGCAGGCATCTCAAAGAGCTTTAAGGGAGAAGCAACTGAAATCTATATTTCAATGGCGCAAGAAGCTTCTTGAAACACACTGGGCCATTCGTGATGCCCGTACTGCTCGCAACAGGGGGGTGGCCAAATATCACGAAAGGATGTTGAGAGAGTTCTCAAAGCGTAAGGATGATGACAGAAATAAAAGGATGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATCGAAGGTGATGCTGCAGAGAGATATGCTGTTCTTTCAACTTTCTTATCCCAGACTGAAGAGTATCTCCATAAATTAGGAAGTAAGATAACTGCTGCTAAGAATCAACAGGAAGTGGAAGAGGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGTGGCAGCAGCCTGTGCTGGGGAGGAAGTGATGATTAGAAATCGTTTCATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAGCCTTGCTCATGCTGTGAGTGAGAAGGTTGTATGTCAACCATCAATGTTACGGGCAGGAACACTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTAATTGCATACTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGCATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGTCAAAATTATATTCACAAGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGACCGGGCAAGGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTCTGACAGGAACGCCTTTACAGAATGATTTGAAGGAACTGTGGTCGCTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAATAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAAAGGAAGGTCCCACTCAAAATACAGAGGATGATTGGCTTGAGACTGAGAAAAAAGTTATCATTATCCACCGTCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAGGGTTCACTACCACCAAAGGTCTCTATAGTTTTACGATGTAAGATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCTGAGGGTGAGAACAGTAAGATTCAAAAGAATCCTCATTACCAGGCAAAAGAGTACAAGACTTTAAATAACAGATGTATGGAGCTACGTAAAACTTGCAATCATCCATCCCTGAATTACCCATTACTTAGTGAATTATCTACAAATTCAATTGTAAAATCTTGCGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTTAGTACCATGACAAAACTCCTAGACCTCTTGGAAGATTACCTGAATTGGCGAAGACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGATGACCGTGAATCAGCTATAATGGACTTTAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAAAAAAGAGAAGTCAGAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAGGTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGTGGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGACGTTTGACCTTAGAGACATTGTTACATGATGAAGAAAGGTATCAAGAAAATGTCCATGATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAATTGTTCGATCAAATGGATGAAGAACTGGATTGGCCTGAGGACGTGATGCAACATGATGAGGTGCCTGAGTGGCTCCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAGACCATTAAAGAACACTTTATTGGGTGGTAGTGTTGCCATTGAATCCAGTGAGGTGGTGGGTTCTGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAACATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAGTATTCTGAAGCAAGCTCTGAAGACAGAAATGAAGATTCTGCACAAGGGGAAATTGGAGAGTTTGAAGACGATGTGTGTAGTGGGGCTGATGGAAATCGATTGGAAGAGGATGGTCTAACTTCTGATGCTGGATATGAAATTGCTCGTTCTTCAGAAAATGCTAGAAATAATCATGTGGTTGAAGAAGCTGGTTCCTCAGGATCATCCTCTGACAGTCAAAGATTGACAAAGACAGTTTCACCATCAGTTTCTTCCAAAAAATTTGGTTCCCTTTCTGCATTGGATTCCAGGCCAGGCTCCATTTCAAAAATTATGGGAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCTGGTGATTCTCACATGGATCATCAACAGTCAGGTAGTTGGATCCATGATCGTGATGAGGGCGAAGATGAACAAGTTTTGCAGCAACCCAAGATTAAGCGCAAACGTAGTCTTCGTGTTCGTCCCCGCCATGCCATGGAAAGGCTCGAGGACAAGTCTGGCAACGAGATTATTTCTCTTCAACGTGGAGAATCATCTCTTTTGGCAGATTATAAATATCAAATTCAAACAAGGATTGATCCAGAATCAAAATCATTTGGAGACTCGAATGCCAGCAAGCGTGATAAGAATGAATCATCATTAACATCATTAAAAAATAAGCAAAAGTTATCTTCAAGGAAAGTAGCTAATACATCCAAATTACATGGATCACCTAAGTCTAATCGTTTGAATTGCACATCTGCTCCTTCAGAGGATGGTAATGAACACCCCAGAGAAAGTTGGGAGGGGAAGCATCTCAATCCAAATGGATCTTCAGCTCATGGCACTAAGACGACTGAAATCATCCAGAGAGGATGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATCGACAAGGAAGGCCATCAAATTGTACCTTTGCTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGGCATGCAGGTGGATCTGGGAACAGTCTGTTGGATTTACATAAGATTGACCAGCGGATTGATAGAATGGATTATAGCGGAGTAATGGAGCTTGTGTTTGATGTACAGTTCATGTTGAGGGGCGCAATGCATTTCTATGGATACTCATATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATTTTGAAAATTGCGTTTCCGGATACAGACTTTGTAGAAGCAAGAGGTGCACTATCTTTCTCCAGCCAAGTTCCTGCTGGTACTGCAGCATCATCCCCTAGGCAAGTGACAGTTGGCCCTAGCAAAAGGCACAGAGTGACCAATGATGCAGAAACCGATCCATGCCCGTCACAAAAGCCGTCACAAAGCGGATCAACTACCAACGGCGAAAACACCAGGTTCAAAGGTCATTTGCCACAGAAGAACTCAAGAACCGGAAGCGGCAGTGCACGCGAACAACCTCAGCAGGATAACCCTCCACTGCTTGCTCATCCAGGTCAATTGGTTGTATGCAAGAAGAAAAGAAATGAAAGGGATAAATCATTGGGGAAGGGTAGGACTGGATCAACTGGTCCTGTTTCTCCACCTAGTGCTGCTATAAGAAGTCCAGGGTCAGGTTCAACCCCAAAGGATGCTAGATTGGCTCAACAGGGAAGGGTTAGCCAGCCATCTCAACACTCAAATGGGTCTGCTGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGTAAGAGGAGACCAAGCCATATGTAG

Predicted protein sequences of Glyma09g39380

Limit To All Plant Sequences

>Glyma09g39380.1   sequence type=predicted peptide   gene model=Glyma09g39380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSGGGAGGGPGRNPAGRAASTSSAAASPSSSSSAASHLESLKQQQQQQQQQQQMGSRQSFQQQLLRKPEGSEAFLAYQAGLQGVFGSNNFPSSSMQLPQQSRKFVDLAQHGSNQIQGVEQQMLNPAQAAYFQYALQASQQKSALEMQSQQQPKMGMLGPSSVKDQEMRMGNLKMQDLMSMPAVNQAQASSSRNSSEHFTRGEKRVEQGQQLAPDQKSEGNSSSQGAVGNLMSGNIIRPVQDLATQQSIPNSMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMAQLIPLMQSRMVQQPKANDTNLGSLSSPIPVSNQQVTSPAVASESSAHAHSSSDVSAQSGSAKARQTAPPSHLSPPISAGIASSSSDMAALQFSLHGRDAQGSLKQSVLTVNGMPSVHPQQSSANMNLGADHPLNAKSSSSGSEPVKMQYIRQLNQSASQAGGLTNEGGSGNHTKTQGGPSQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSEGAQNQEKSAGNIVAEQPRQNEVNAKESQPISSINGKISSKQEVFVRDENSPVTAVHLQPTPPVTKESAGQEEQQSVACAPKSDQESEHGIGRNELVLDKGKAVAAPQASVTDAMQLNKPAQASTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINNNNLSLAYDVKELLFEEGMEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIEGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRVAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVSEKVVCQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELHTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMELRKTCNHPSLNYPLLSELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLEDYLNWRRLVYRRIDGTTSLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDEVRSGGTVDMEDELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAALSKRPLKNTLLGGSVAIESSEVVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNEDSAQGEIGEFEDDVCSGADGNRLEEDGLTSDAGYEIARSSENARNNHVVEEAGSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDSRPGSISKIMGDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSLRVRPRHAMERLEDKSGNEIISLQRGESSLLADYKYQIQTRIDPESKSFGDSNASKRDKNESSLTSLKNKQKLSSRKVANTSKLHGSPKSNRLNCTSAPSEDGNEHPRESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGHAGGSGNSLLDLHKIDQRIDRMDYSGVMELVFDVQFMLRGAMHFYGYSYEVRTEARKVHDLFFDILKIAFPDTDFVEARGALSFSSQVPAGTAASSPRQVTVGPSKRHRVTNDAETDPCPSQKPSQSGSTTNGENTRFKGHLPQKNSRTGSGSAREQPQQDNPPLLAHPGQLVVCKKKRNERDKSLGKGRTGSTGPVSPPSAAIRSPGSGSTPKDARLAQQGRVSQPSQHSNGSAGSVGWANPVKRLRTDSGKRRPSHM*

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