Glyma09g39361 - SoyBase

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Report for Sequence Feature Glyma09g39361

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44457796
stop:	44464020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39361

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46040	AT	Annotation by Michelle Graham. TAIR10: ARID/BRIGHT DNA-binding domain;ELM2 domain protein \| chr2:18935684-18937807 REVERSE LENGTH=562	SoyBase	E_val: 7.00E-71	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF01388	PFAM	ARID/BRIGHT DNA binding domain	JGI		ISS
PF01448	PFAM	ELM2 domain	JGI		ISS
UniRef100_G7LAX0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB165 n=1 Tax=Medicago truncatula RepID=G7LAX0_MEDTR	SoyBase	E_val: 8.00E-141	ISS
UniRef100_I1L6I0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6I0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39361

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g39361 not represented in the dataset	Glyma09g39361 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39361

Paralog	Evidence	Comments
Glyma18g46951	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39361 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g257700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39361

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g39361

Limit To All Plant Sequences

>Glyma09g39361.2   sequence type=transcript   gene model=Glyma09g39361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCTCTTCCTTCTAGAAGGAAATTAGAAAGAAAGAAAAAAGAAAATAGAAAAGAGGTTTAGGAAAAAAAAATATGAAATACCATTGGGCTTTGGAAAATTAAGAGCCAAGTTGGTGCCAAACCAAAAGTTAAATGAGTTCACATTAGGTTGGCTGTGGAAGCATTTCTCTCAAGCTTCACTTTATTGATACTGGGGTGCATGCTGTTTTGATCAATTCCTGGTGGGTTGCTTATGAAAGAAATCCGTGTCTAGAAAATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAGGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTTGAACTTGCTTATAGTAAGCATTTGAGTTCTCTTGAGGCATGTTTGAAGAATGTTGCTGATGGTAAGCTTCCCGAGTGTGGTTTAGTGGATGATAGGGTTAAGTTTCACAAGCATTTGATGGAGGCACAAGCTGAATCCTTGTTGGATGATTCTGGTGAGAAAGAGGTGGGGGATGGACTCGAGAGGAGAGCGTGTTGCTGTCCGGATGGGAGGAAGTTGGGTGGTAGTAATAGAGTGAAGGGCGTGAAGCCGGAGTCAAATGTGGCTGAACTTGAGAGGGTATATGAGTATTTAGATGGGACAAAGTCGTGTGTTAGTGATAGTGTAAAGGGCAAGAAATCGGATTATAATGGGGATGAATTTGATAATGTATGTGATTTTCTAGATGGGAGGGAGTTGTGTGGTACTAATAGGGTGAAGGGCATGAGTCCAGAGTCTAATGGGGACAAGAAAGTCCAGAGCGAAGGACTTGTTGATTTGGATATGCTGGACCATGGGACAGATGAGCATATTATCAGAAACTTGTGCAGCCTTAATACTGAGAGGGATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAAAGCAACATGCCTAGATTGTCGGATGGAAGCAAGAGCTGTGATAACGATGATGATGACGATAGTGATGATGTATTGATATTGGATCCATCTGGGGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATCCCACAGTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTACAGTAGTCAGGAGATCTGGAAGCAGGCTTTGCTGTTTCGAGAAGCTGTCTTTTTGAAGAAAGATTTTGAGACAATCAGTGAACAGCTTAGTTGGCAGGGACAGAAAATGCATCCTTCCATGTATGATGATCGTGTTGGGGCAATATACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTTGGAAAAGCTACATCTGAAGGAGTCTCCTCAGCTTCATCTGGAGGAACACATGGATATTTGGAGAGAACCCCAAGTTCTCGTGCTGAAGATTGTGCTGAGAAACAGTTGCCTGACTCCTGTACTGCACGCTCAAGTCTTGATATATGTGCCAGAGTGCCCATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGACATAACTTATGAGGTTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCTAAAAACTGTAAATTCCAAGCATCATCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAGATTCATGTAGCTGCCGAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCATTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAATTGGGGGTTCATGGACAGAGAAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGAGAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATGCACACCATTGAGGAAAGTTTTTGGACATCATCCACCAAAAGCACGCAGCTTCACCTTGTTATCGCCAAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGAACCTCAGTCAAATCCCAAGCTTCATTGATAAAGTGAATTGACAATTTTGTGCGTCTTCACTGCAGCAATTTTCAGTATCAATGGATCATTCTCTCCTAGCTTATAATTTTAAATCACCCTTGATTTTGGGGAGTAAAATAATGTAACATAAAAGTTTGGTTTGGTGTAGGGTCGATTTATGAGAGATGAATGATGTTCTTCAGAAGCCGAAAACTATGAAGATCTGACTGCTAAGAAGTTGGGGTTGCTTTTAGTTTACATGCTTCCAATTTTGAGACATCCCTTTTGTCTGTTGGCAGTGATATGTCGCAGCCACAGTTACTGTTGCACATTTTATTTTCACCAGGTTTTGACAAGGGTTACTTAAAGTTAAAACAACAGCATGAGGAATATATAGAGCAACATTTTCTTATAGAGTTTCATGAACAAATGCAGTAAAGTGTTATTTAAATTTCAGCCTTTCATCTGATGCGAATTTCTATTTGAATGTTTCTTGCAATGTAGATATTGTTTTTAGCTCAGGTATTTGCAAGCTTGTCTATTACTTTTGCTATGGACGAAATTTAGATAAAGTTTCTTATGTGTTTTTAATGTTATTCTCTAATTAAAAT

Coding sequences of Glyma09g39361

Limit To All Plant Sequences

>Glyma09g39361.1   sequence type=CDS   gene model=Glyma09g39361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAGGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTTGAACTTGCTTATAGTAAGCATTTGAGTTCTCTTGAGGCATGTTTGAAGAATGTTGCTGATGGTAAGCTTCCCGAGTGTGGTTTAGTGGATGATAGGGTTAAGTTTCACAAGCATTTGATGGAGGCACAAGCTGAATCCTTGTTGGATGATTCTGGTGAGAAAGAGGTGGGGGATGGACTCGAGAGGAGAGCGTGTTGCTGTCCGGATGGGAGGAAGTTGGGTGGTAGTAATAGAGTGAAGGGCGTGAAGCCGGAGTCAAATGTGGCTGAACTTGAGAGGGTATATGAGTATTTAGATGGGACAAAGTCGTGTGTTAGTGATAGTGTAAAGGGCAAGAAATCGGATTATAATGGGGATGAATTTGATAATGTATGTGATTTTCTAGATGGGAGGGAGTTGTGTGGTACTAATAGGGTGAAGGGCATGAGTCCAGAGTCTAATGGGGACAAGAAAGTCCAGAGCGAAGGACTTGTTGATTTGGATATGCTGGACCATGGGACAGATGAGCATATTATCAGAAACTTGTGCAGCCTTAATACTGAGAGGGATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAAAGCAACATGCCTAGATTGTCGGATGGAAGCAAGAGCTGTGATAACGATGATGATGACGATAGTGATGATGTATTGATATTGGATCCATCTGGGGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATCCCACAGTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTACAGTAGTCAGGAGATCTGGAAGCAGGCTTTGCTGTTTCGAGAAGCTGTCTTTTTGAAGAAAGATTTTGAGACAATCAGTGAACAGCTTAGTTGGCAGGGACAGAAAATGCATCCTTCCATGTATGATGATCGTGTTGGGGCAATATACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTTGGAAAAGCTACATCTGAAGGAGTCTCCTCAGCTTCATCTGGAGGAACACATGGATATTTGGAGAGAACCCCAAGTTCTCGTGCTGAAGATTGTGCTGAGAAACAGTTGCCTGACTCCTGTACTGCACGCTCAAGTCTTGATATATGTGCCAGAGTGCCCATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGACATAACTTATGAGGTTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCTAAAAACTGTAAATTCCAAGCATCATCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAGATTCATGTAGCTGCCGAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCATTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAATTGGGGGTTCATGGACAGAGAAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGAGAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATGCACACCATTGAGGAAAGTTTTTGGACATCATCCACCAAAAGCACGCAGCTTCACCTTGTTATCGCCAAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGA

>Glyma09g39361.2   sequence type=CDS   gene model=Glyma09g39361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAGGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTTGAACTTGCTTATAGTAAGCATTTGAGTTCTCTTGAGGCATGTTTGAAGAATGTTGCTGATGGTAAGCTTCCCGAGTGTGGTTTAGTGGATGATAGGGTTAAGTTTCACAAGCATTTGATGGAGGCACAAGCTGAATCCTTGTTGGATGATTCTGGTGAGAAAGAGGTGGGGGATGGACTCGAGAGGAGAGCGTGTTGCTGTCCGGATGGGAGGAAGTTGGGTGGTAGTAATAGAGTGAAGGGCGTGAAGCCGGAGTCAAATGTGGCTGAACTTGAGAGGGTATATGAGTATTTAGATGGGACAAAGTCGTGTGTTAGTGATAGTGTAAAGGGCAAGAAATCGGATTATAATGGGGATGAATTTGATAATGTATGTGATTTTCTAGATGGGAGGGAGTTGTGTGGTACTAATAGGGTGAAGGGCATGAGTCCAGAGTCTAATGGGGACAAGAAAGTCCAGAGCGAAGGACTTGTTGATTTGGATATGCTGGACCATGGGACAGATGAGCATATTATCAGAAACTTGTGCAGCCTTAATACTGAGAGGGATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAAAGCAACATGCCTAGATTGTCGGATGGAAGCAAGAGCTGTGATAACGATGATGATGACGATAGTGATGATGTATTGATATTGGATCCATCTGGGGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATCCCACAGTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTACAGTAGTCAGGAGATCTGGAAGCAGGCTTTGCTGTTTCGAGAAGCTGTCTTTTTGAAGAAAGATTTTGAGACAATCAGTGAACAGCTTAGTTGGCAGGGACAGAAAATGCATCCTTCCATGTATGATGATCGTGTTGGGGCAATATACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTTGGAAAAGCTACATCTGAAGGAGTCTCCTCAGCTTCATCTGGAGGAACACATGGATATTTGGAGAGAACCCCAAGTTCTCGTGCTGAAGATTGTGCTGAGAAACAGTTGCCTGACTCCTGTACTGCACGCTCAAGTCTTGATATATGTGCCAGAGTGCCCATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGACATAACTTATGAGGTTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCTAAAAACTGTAAATTCCAAGCATCATCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAGATTCATGTAGCTGCCGAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCATTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAATTGGGGGTTCATGGACAGAGAAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGAGAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATGCACACCATTGAGGAAAGTTTTTGGACATCATCCACCAAAAGCACGCAGCTTCACCTTGTTATCGCCAAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGA

Predicted protein sequences of Glyma09g39361

Limit To All Plant Sequences

>Glyma09g39361.1   sequence type=predicted peptide   gene model=Glyma09g39361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSNGDPLDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSVELAYSKHLSSLEACLKNVADGKLPECGLVDDRVKFHKHLMEAQAESLLDDSGEKEVGDGLERRACCCPDGRKLGGSNRVKGVKPESNVAELERVYEYLDGTKSCVSDSVKGKKSDYNGDEFDNVCDFLDGRELCGTNRVKGMSPESNGDKKVQSEGLVDLDMLDHGTDEHIIRNLCSLNTERDILEEFDGGKILTVDASDAESNMPRLSDGSKSCDNDDDDDSDDVLILDPSGVDKEIFGRKRKRESKSEMLSWITSIAKNPCDPTVGSIPEKSKWKSYSSQEIWKQALLFREAVFLKKDFETISEQLSWQGQKMHPSMYDDRVGAIYNLRQRLKCDKRVLFGKATSEGVSSASSGGTHGYLERTPSSRAEDCAEKQLPDSCTARSSLDICARVPIPLGPNHQAEVPEWTDITYEVDSKWLGTQIWPLKTVNSKHHLFERDPIGEGRQDSCSCRVQGSVECVRFHIAKKRAKVKLELGEAFHQWNLHKVGEEIGGSWTEKEEKKFKDVVKSNPASLEKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESECTPLRKVFGHHPPKARSFTLLSPKKATFKRENNK*

>Glyma09g39361.2   sequence type=predicted peptide   gene model=Glyma09g39361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSNGDPLDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSVELAYSKHLSSLEACLKNVADGKLPECGLVDDRVKFHKHLMEAQAESLLDDSGEKEVGDGLERRACCCPDGRKLGGSNRVKGVKPESNVAELERVYEYLDGTKSCVSDSVKGKKSDYNGDEFDNVCDFLDGRELCGTNRVKGMSPESNGDKKVQSEGLVDLDMLDHGTDEHIIRNLCSLNTERDILEEFDGGKILTVDASDAESNMPRLSDGSKSCDNDDDDDSDDVLILDPSGVDKEIFGRKRKRESKSEMLSWITSIAKNPCDPTVGSIPEKSKWKSYSSQEIWKQALLFREAVFLKKDFETISEQLSWQGQKMHPSMYDDRVGAIYNLRQRLKCDKRVLFGKATSEGVSSASSGGTHGYLERTPSSRAEDCAEKQLPDSCTARSSLDICARVPIPLGPNHQAEVPEWTDITYEVDSKWLGTQIWPLKTVNSKHHLFERDPIGEGRQDSCSCRVQGSVECVRFHIAKKRAKVKLELGEAFHQWNLHKVGEEIGGSWTEKEEKKFKDVVKSNPASLEKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESECTPLRKVFGHHPPKARSFTLLSPKKATFKRENNK*

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