SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g39300

Feature Type:gene_model
Chromosome:Gm09
Start:44419511
stop:44423296
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g39300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00335AT Annotation by Michelle Graham. TAIR10: RING-H2 finger B1A | chr4:146866-147962 FORWARD LENGTH=190 SoyBaseE_val: 3.00E-71ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI ISS
PTHR22766:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7LBQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7LBQ0_MEDTR SoyBaseE_val: 8.00E-92ISS
UniRef100_I1L6H5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6H5_SOYBN SoyBaseE_val: 3.00E-133ISS

Expression Patterns of Glyma09g39300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39300
ParalogEvidenceComments
Glyma18g46990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g257100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g39300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g39300
>Glyma09g39300.1   sequence type=CDS   gene model=Glyma09g39300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTATATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATAATGGCACGAATGCTTCAGTCAATGCTGGATTTCTCATTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGTCCCCTCCCGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCTTACATCGCCAAGGAAGGCACAACTACCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGTAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATTTGTGATCAGGAGATGATATTTTGA
Predicted protein sequences of Glyma09g39300
>Glyma09g39300.1   sequence type=predicted peptide   gene model=Glyma09g39300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTFQSPPVPLPYDMVLGGSASTYSESGRETVSSFETLITREDVEESDCKAQANSALTSPRKAQLPKSNVTQVLVTEEEDVCPICLEEYDVENPSNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo