Glyma09g39285 - SoyBase

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Report for Sequence Feature Glyma09g39285

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44402962
stop:	44404852
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39285

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00008	PFAM	EGF-like domain	JGI		ISS
UniRef100_A0MK38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Delta-like protein n=1 Tax=Parhyale hawaiensis RepID=A0MK38_9CRUS	SoyBase	E_val: 2.00E-08	ISS
UniRef100_I1N3S9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3S9_SOYBN	SoyBase	E_val: 2.00E-132	ISS

Expression Patterns of Glyma09g39285

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g39285 not represented in the dataset	Glyma09g39285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39285

Paralog	Evidence	Comments
Glyma18g47010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39285 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g256900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39285

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39285

Limit To All Plant Sequences

>Glyma09g39285.1   sequence type=CDS   gene model=Glyma09g39285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATCACCACAGGAATATGTCAAGTAGTTGCTGTTTCGTTGCTTTTGGGATCACTGAGTGTGTATTCCTTGGAATGTGATGATGATCGCTGCAAAACTTGGTTGTGCAACAGCACTGGTGCCTGCACTTGCAACCTTCCTGATCCTTCCACCATCTTAAATGGTGATAGAACTTTCCTCGGGGGTACGTTTTGTGATGAAGAAATGACCATGTGTGATGGGACAAACTCCTTCTGGTGTGAACATGGGGCAACTTGTGAGGAGATTGTTCAAGGAGAGAAGTACTCTTGCAAATGTCCCCCTGGATTTGCTGGGGAGCATTGTGAGCATTCTGGAGCATCTTGTGGTCAGACTTTTTGCTTCCATAATGCTGAATGCTTGGCTGAAGCAGGTGATGTTTGCCAGTGCCCTTCTGAATGGAAAGGCAGTGCCGATTGCTCTCTTCCAACCACACCAACAGTTTTTTACTCAAATTCAAGTGACAGAAAATCATCTAAAGTCAGCAGCTGCAGTGACTCCAATAAGGCACTGGCTGTCTTGGCAGTTTCTTCAGTGGGAGCAGCTGCTGCTGGTGCCATTTATGGCAAGAAACTGTTCAACAAGAAAAAAAGAGAGGCAAAGTTCCAGCAATTATCTGAAATGCAGACTCAGGGGATATTGGATGGTGATGATGACGAGGATGACAACCACAATATGGTACCCCAGAGGGTTCATGGTGATATTTCACACAATTAG

Predicted protein sequences of Glyma09g39285

Limit To All Plant Sequences

>Glyma09g39285.1   sequence type=predicted peptide   gene model=Glyma09g39285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSITTGICQVVAVSLLLGSLSVYSLECDDDRCKTWLCNSTGACTCNLPDPSTILNGDRTFLGGTFCDEEMTMCDGTNSFWCEHGATCEEIVQGEKYSCKCPPGFAGEHCEHSGASCGQTFCFHNAECLAEAGDVCQCPSEWKGSADCSLPTTPTVFYSNSSDRKSSKVSSCSDSNKALAVLAVSSVGAAAAGAIYGKKLFNKKKREAKFQQLSEMQTQGILDGDDDEDDNHNMVPQRVHGDISHN*

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