Glyma09g39270 - SoyBase

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Report for Sequence Feature Glyma09g39270

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44370310
stop:	44383541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28350	AT	Annotation by Michelle Graham. TAIR10: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor \| chr5:10320301-10326781 FORWARD LENGTH=1127	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2006	KOG	WD40 repeat protein	JGI		ISS
PTHR22746	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR22746:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07064	PFAM	RIC1	JGI		ISS
UniRef100_I1L6H1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6H1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HUD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD40-like n=1 Tax=Medicago truncatula RepID=Q2HUD0_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39270

Paralog	Evidence	Comments
Glyma18g47050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g256700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39270

Limit To All Plant Sequences

>Glyma09g39270.1   sequence type=CDS   gene model=Glyma09g39270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATATGGCATATGGGTGGCCTCAGGTCATCCCTCTGGAGCAAGGACTGTCTCCCTCTGCACAGAAGATTGTATACCTCAAACTCATCAATCGCACGTTACTCGTTGTCTCCCCCACTCACTTTGAACTCTGGAGCACTTCCCAGCATAGAGTGAGATTGGGGAAGTACAAGAGAGATTCAGATTCATTGCAGAGGGAAGGAGAAAACTTGCAGGCCGCGTGGAGCCCTGATGCCAAATTAATCGCTATTCTTACATCTGCATTCTTTCTTCACATTTTCAAGGTCCAGCTCTCAGATAAAAGAATACATACTGGTGGGAAACAACCCTCTGCTTTGTGCCTAGCTACTGTTTCTCTTCTGCTTACAGAACAAGTTCCTTTTGCAGTAAAGGATTTGTCAGTGAGCAATATTGTTAGTGATAACAAACATATGCTACTTGGACTTTCTGATGGAACTTTATACAGTATGTCTTGGAAAGGGGAGTTCTATGGTGCTTTTCAATTTGATCCACAACCTACCTCTAGCTTTGACAATTCTCAAATGCCACTTACTCTAGAGAATGGCCTTTCTCCTAAAAGTCACCCAAAGGTTCTTATGTCCAATCACATTATTCCTAGAAAGTCTGAAATCAACCAACTGGAGCTTTGCCTTCCGTTGAGGTTGCTATTTGTCTTGTATTCTGACGGGCAACTTGTCTCATGCTCTGTGAGTAAAAAAGGCCTAAAGCAAGTTGACTGTATCAAAGCAGAAAAGAGTTTGGCTTGTGGTGATGCTGTCTGTGCTTCAGTAGCTCTAGAGCAGCAAATTCTTGCTGTTGGTACCAAAAGAGGAATAGTGGAGTTGTATGATTTGGCTGAATCAGTATCACTTATACGTGCCGTCTCTTTGTATGACTGGGGATATTCGATGGATGACACTGGCCCTGTTAGTTGCATTGCTTGGACACCTGATAATTCCGCTTTTGCAGTTGGGTGGAAGTTAAGGGGGCTTACAGTTTGGTCTGTTTCTGGGTGTCGCTTGATGTCAACAATCCGACAAATAGGATTAAGTTCTGTGTCTTCTCCAATATCTAAACCAAACCATGATTGTAAGTATGAACCATTGATGGGTGGTACCTCACTGATGCAGTGGGATGAATATGGATATAGACTTTATGCTATTGAGGTGGGGTCTTCAGAGAGAATTATATCGTTCTCATTTGGGAAATGCTGTCTTAGCAGAGGTGTTTCAGGCACTACATACATCCGGCAAGTGATTTATGGGGAAGACCGTTTACTGATTGTGCAGTCAGAAGAGACTGATGAACTTAAAATGCTACATCTTAAGCTTCCAGTTTCTTATATTTCCCAAAACTGGCCTGTTCAACATGTGGCAGCTAGCCAGGATGGAATGTACTTAGCAGTTGCTGGTCTTCACGGTTTGATATTGTATGATATACGATTGAAAAGATGGAGAGTATTTGGAGATGTTACTCAGGAGCAAAAGATTCAGTGTAAAGGCTTGTTATGGCTGGGGAAGATTGTCGTTGTCTGCAACTATGTTGATTCATCAAACACTTATGAATTGCTCTTTTACCCAAGATATCACCTTGATCAAAGCTCATTACTCTGTCGAAAACCGTTGCTTGCTAAACCAATGGTGATGGATGTGTACCTAGATTATATGCTGCTTACATATAGACCATTTGATGTCCACATATTCCATGTGAAATTATTTGGTGAATTAACTCCTTCAGGAAATCCAGATTTACAGCTTTCTGCAGTACGAGAACTTTCAATTATGACTGCCAAGAGCCATCCTGCAGCAATGCGATTCATTCCTGATCAATTTCCAAGAGAATCTATTTCAAACATTTCGGTTTCGTCAGATTCATTAACAAGAGAGCCAGCAAGATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGGTTTGGTATCCATCTCCAGGTGCTAATTCTTTTAAGCAGGAGGATTTCTTACAGTTGGATCCGGAGCTGGAGTTTGATCGTGAAGTATACCCTTTGGGACTTCTTCCAAATGCTGGTGTGGTTGTTGGTGTTTCCCAGAGAATGTCATTTCCAGCAAGTGCTGAATTTCCATGTTTTGAACCATCTCCTCAAGCACAAACAATACTGCACTGCCTACTCCGCCATCTTCTTCAGAGGGACAAAATTGAGGAAGCCTTAAGGCTTGCAGAGCTATCAGCTGAGAAGCCCCATTTTTCACATTGTCTAGAGTGGCTTCTTTTTACAGTATTTGAAGCAGAGATATCCAGGCCAAATGTGAACAAGAACCAGATCTCAGTTGTTAATCATGCTAAAAGGTCTCTTTTAGAGAAGACCTGTGACCTGATCAGGAATTTTCCGGAGTACCTTGATGTTGTTGTAAGTGTTGCAAGAAAAACTGATGGTCGTCATTGGGCAGATTTGTTCACTGCTGCTGGAAGATCAACAGAATTGTTTGAGGAATGCTTTCAACGTAGATGGTATCGCACTGCAGCTTGCTATATACTTGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCATTACGATTACTACAGGCAACACTTGATGAATCATTGTACGAGCTTGCTGGGGAGCTGGTGCGGTTCTTGCTAAGATCTGGTAGGGAATATGACCAAGCATCAAATGATTCAGATAAATTGTCTCCCAGATTTTTAGGCTATTTTCTTTTTCGTTCTAGTGAGCAGAAGCAATCACTGGATAAAAGCACCTCATTCAAAGAACAAAGTGCTCATGTTACCTCTGTTAAGAATATTTTAGAAAACCATGCTAGTTACCTGATGTCTGGGAAAGAGCTCTCCAAGCTTGTTGCATTTGTAAAAGGAACTCAGTTTGATTTAGTGGAGTATCTACAACGTGAAAGATATGGAAGTGCTCGGTTGGAGAATTTTGCTTCTGGGCTTGAACTAATAAGCCAAAAGCTTCAAATGGGAACATTACAGAGCCGTTTGGATGCTGACTTTCTCCTATCTCATATGTGCTCTGTTAAGTTTAAGGAATGGATAGTTGTCCTGGCTACTCTCTTAAGACGTTCTGAGGTTCTTTTTGACTTATTCCGTCATGATGTTCGTCTGTGGAAAGCATACAGCACCACCCTGGAGTCACACCCAGCATTTACAGAATATCAAGATTTGCTGGAAGACCTGGAAGAGAGCCTTTCATCAGTTGCAAATGTGGAAGGAAAATGA

Predicted protein sequences of Glyma09g39270

Limit To All Plant Sequences

>Glyma09g39270.1   sequence type=predicted peptide   gene model=Glyma09g39270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYMAYGWPQVIPLEQGLSPSAQKIVYLKLINRTLLVVSPTHFELWSTSQHRVRLGKYKRDSDSLQREGENLQAAWSPDAKLIAILTSAFFLHIFKVQLSDKRIHTGGKQPSALCLATVSLLLTEQVPFAVKDLSVSNIVSDNKHMLLGLSDGTLYSMSWKGEFYGAFQFDPQPTSSFDNSQMPLTLENGLSPKSHPKVLMSNHIIPRKSEINQLELCLPLRLLFVLYSDGQLVSCSVSKKGLKQVDCIKAEKSLACGDAVCASVALEQQILAVGTKRGIVELYDLAESVSLIRAVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPISKPNHDCKYEPLMGGTSLMQWDEYGYRLYAIEVGSSERIISFSFGKCCLSRGVSGTTYIRQVIYGEDRLLIVQSEETDELKMLHLKLPVSYISQNWPVQHVAASQDGMYLAVAGLHGLILYDIRLKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYVDSSNTYELLFYPRYHLDQSSLLCRKPLLAKPMVMDVYLDYMLLTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTAKSHPAAMRFIPDQFPRESISNISVSSDSLTREPARCLILRANGELSLLDLDDGRERNLTDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQVWYPSPGANSFKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFPASAEFPCFEPSPQAQTILHCLLRHLLQRDKIEEALRLAELSAEKPHFSHCLEWLLFTVFEAEISRPNVNKNQISVVNHAKRSLLEKTCDLIRNFPEYLDVVVSVARKTDGRHWADLFTAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLDESLYELAGELVRFLLRSGREYDQASNDSDKLSPRFLGYFLFRSSEQKQSLDKSTSFKEQSAHVTSVKNILENHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGSARLENFASGLELISQKLQMGTLQSRLDADFLLSHMCSVKFKEWIVVLATLLRRSEVLFDLFRHDVRLWKAYSTTLESHPAFTEYQDLLEDLEESLSSVANVEGK*

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