SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G41460 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF604) | chr5:16589724-16592197 REVERSE LENGTH=524 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG2246 | KOG | Galactosyltransferases | JGI | ISS | |
| PTHR10811 | Panther | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE RADICAL FRINGE | JGI | ISS | |
| PTHR10811:SF5 | Panther | RADICAL FRINGE | JGI | ISS | |
| PF04646 | PFAM | Protein of unknown function, DUF604 | JGI | ISS | |
| UniRef100_D7LZJ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZJ1_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023388CC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023388CC related cluster n=1 Tax=unknown RepID=UPI00023388CC | SoyBase | E_val: 0 | ISS |
|
Glyma09g39233 not represented in the dataset |
Glyma09g39233 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g256300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g39233.1 sequence type=CDS gene model=Glyma09g39233 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACCATTCATGTGCACCATGAACAACAACAACCTCAAAGATTCAGAAAACTTCCACAACTCTTCATGGACCATAGCAAAACTAATGACTTCCTTCTTCCTCTTAATCTCCATCTCCTACCTCTTCTACTCCCTTGGATTCATCACACATTCATATGATTGCCCTCAAAAAAAGCCTTACCCTTTTCCCACCACCACTCACTTTTCCAATAAGACTGCTCCTCCCCCATCTCAACACACCAACAAAACAACAACCTTTGAGGAGAAAAAAACCATCATTTCCCACATAGTATTTGGCATAGCATCCTCATCAAGGCTATGGAACCATAGAAAAGAGTACATCAAACTATGGTGGAGGCCAAACGAAACAAGGGGAAACGTGTGGCTAGACCAAGAAGTGAAAAGTGAACCTAGTGAGGAGCACCTTCTACCAACATTGAGAATATCCAGTGATGTCTCAAAGTTCAAGGTCAAGAATCCACAGGGGGACAGGTTGGGGGTTCGAATCTCTCGAATAGTGTCAGAGACAGTGAGGCTAGGGATGGAGAAGAATAACAACAATGTGAGGTGGTTTGTGATGGGGGATGATGACACTTTCTTTGTGACTGAGAATTTGGTGAAGGTGTTGCAAAAATATGATCATAATCAATTTTATTATATAGGGACAAATTCAGAGAGCCACTTGCAAAATATTCATTTTTCTTATAACATGGCTTATGGAGGTGGAGGGTTTGCAATTAGTTACCCTTTGGCAGTGGCATTGGAGAGAATGCAGGATAAGTGCCTTCAGAGGTACCCTGCATTGTTTGGCTCAGATGATAGGATCCAGGCTTGTATGGCAGAGCTTGGTGTCCCTCTCACTAAGGAGATTGGCTTTCACCAGTTTGATGTATATGGCAACGTGTTTGGACTCCTAGCAGCACATCCCATTACACCCCTAGTTTCCATGCATCATTTGGACGTGGTTGAGCCCATATTTCCAAACGTGGACCGTGTTGAGGCCCTAAAGCGGCTGATTGGGCCCATGAAACTGGACTCATATGGGCTGATGCAACAGTCCATTTGCTACGACAAAGCCCGGCATTGGACCATATCCGTGTCTTGGGGCTATGCGGTTCAAATATTCCGGGGCATTTTCTTGGCCCGGGACATGGAGATTCCGGCCAGAACCTTTTTGAATTGGTACCGGCGGGGAGATTATACCAGTTTTCCGTTCAACACGCGCCCTTTCAGTCGCAATTCTTGCCAGAAACCTTTTGTTTTTTACCTGTCAAATGCAACCTTTGGTGGAGTTGGTGATGAAACTATGAGTGAGTATATTCGGGTCCAGCCCAACCCGGACTGTAAATGGAAAATGCCCGATCCGACCCAAATCCAAGTAATAAAGGTCCATAAGAAACCTGACCCACATTTGTGGGACAAGTCTCCTAGAAGAAATTGTTGCAGGGTTCAACCGTCAAAGAAAGATGGAACTCTGGTGATTGACGTGGGAGAATGCAGAAAAGATGAATTTGCTCATGAATAG
>Glyma09g39233.1 sequence type=predicted peptide gene model=Glyma09g39233 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPFMCTMNNNNLKDSENFHNSSWTIAKLMTSFFLLISISYLFYSLGFITHSYDCPQKKPYPFPTTTHFSNKTAPPPSQHTNKTTTFEEKKTIISHIVFGIASSSRLWNHRKEYIKLWWRPNETRGNVWLDQEVKSEPSEEHLLPTLRISSDVSKFKVKNPQGDRLGVRISRIVSETVRLGMEKNNNNVRWFVMGDDDTFFVTENLVKVLQKYDHNQFYYIGTNSESHLQNIHFSYNMAYGGGGFAISYPLAVALERMQDKCLQRYPALFGSDDRIQACMAELGVPLTKEIGFHQFDVYGNVFGLLAAHPITPLVSMHHLDVVEPIFPNVDRVEALKRLIGPMKLDSYGLMQQSICYDKARHWTISVSWGYAVQIFRGIFLARDMEIPARTFLNWYRRGDYTSFPFNTRPFSRNSCQKPFVFYLSNATFGGVGDETMSEYIRVQPNPDCKWKMPDPTQIQVIKVHKKPDPHLWDKSPRRNCCRVQPSKKDGTLVIDVGECRKDEFAHE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
