Glyma09g39170 - SoyBase

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Report for Sequence Feature Glyma09g39170

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44317234
stop:	44320171
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46080	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:18948317-18949360 REVERSE LENGTH=347	SoyBase	E_val: 1.00E-147	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF05633	PFAM	Protein of unknown function (DUF793)	JGI		ISS
UniRef100_C6THK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THK9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7L6L1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein BPS1 n=1 Tax=Medicago truncatula RepID=G7L6L1_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39170

Paralog	Evidence	Comments
Glyma18g47160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g255800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g39170

Limit To All Plant Sequences

>Glyma09g39170.4   sequence type=transcript   gene model=Glyma09g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATATTTTGGGAAAAAGAAATTCTGACAACGTGTTATTAGGTCAACAAAAAAATGATTAACGAAATAAATACGATGGGCAAGGGACCAACAAGATGACACCACGTTTCTCAGTTCACAGAATCTGATGCCAAACTTGGTAGCTTTATCATTATCACCTCCTTCACTAGCTATCACCAACATTCATTTAATTCACATTTCACACACTCAAATCCTATCTCGTATCAAAGGAACAAAACAACCACCCAACTAACCCTAATTCAACTTTTCCGATCTGATCACTTCGAGGTGCTTTCTTTCACTCTTTGATCATCTCGCTTTCCCCTTTTCCTCAACCAAAGTTTTCGATCTTTCATTTATTTATTTATTCTCTGAAAATCTATCGAAATAGAATTGCCTACCCCCAATTTTTGTCCTTTAGTGGAAAATCTGAGAATTGCTCAAGTTTTTCGCTTTGATTGATTTTCCAGCTACTCGATCTATTGTATTTGTAAAAATTCCAAATGAGTCGGGCACAGGATGCAAACCAATCATTCTTCCCTTTTGGAAATCCTTTTAGGATGATATCACCTAAAAGCCCTAAAATTTCTTCACAGCTGTTGTTAATTCTACATGCTTTTGAAGCAACTTTGGAAGAGAGGCTGAAAAAGCTTATTCCCAAGAGCAAGGATGAGATCCTCAGCTTGTCTTGGATGACTTTGGCTATGCAGTCACTTTGTGAGAGCCATAATGACATTAAAACCATCATAACAGAGCTTGAGCTTCCTGTACATGATTGGGATGAGAAATGGATAGACGTGTACTTGGACATTAGTGTGAAGTTGCTAGATATATGCATTGCATTTAGCTCTGAATTATCACGCCTGAACCAGGGTCATCTTTTACTTCAGTGTGCATTGCACAATTTAGGTTCTTCCTCTTCAGAGCAGTATGTTCGGGCATGTTCTTCACTTGATGGTTGGAAACAGCATATTGGTTCTGGAAACCCTAGGATTGAGAAATGTGGCAGCATTTTGGATGATCTTCTGCGGTCACTTGATCTTCCAAAGGTTAAAAAGTCCGCTAAAGGAAAGGTTTTGATGCAAGCTATGTATGGAGTAAAGGTGCAGACAGTATTTGTATGCAGTGTGTTTGCTGCGGCTTTTTCGGGCTCTACAAAGAATATGTCAGATTTGAATGTGGCTGATGTATATTCTTGGGCTCCAACCTTTAAAAGTTTGCAAGATCTTGTAAATGAGGAAATTAGAGTAAGATTTTCAAGTGGGAGATTTACTATATTGAATGAGTTGGAAGTAGTTGATTCCTCTGTGAAGGAATTATATCCTATTATCCAGGGCATTGCAGATACCATTGAGACAGAATCACTTGCGAAGATTGTTGGGGAATTAAGCAGAGCAACAGAGAAGCTTTCACAAGGACTAGATCTTCTTACAAAGGAAGTCGATAGCTTTTTCCAAGTGGTCTTGACCGGTCGTGATACCTTGCTATCTAGTCTGAGGTCAGGTGCAACTTTCATTGACAGCATTCAGGCGGGTAACAGAGATGCACAAATAGTCAATTGAATGTGTTGCAGCCTAACTGTGGTAGATACTGATGGATCTAGGTATTGGGTTTCATGTTTTATGGTTGATGGTTTTCAATCATGTTTGGCTTATTGTATTCAAGTTAGAATGAGTAATAGGTTATATGATTATATTATTATGGTTCTGAAATGTATATTTCTGATGTTCTGTTTCTGTGTAATGTTATATGATAAAATATATATAAGAAAGTTGCTTGTGCTCACAGAAGTTTGTAATTTGCAACCCTGTCATTCTTTCTATTCATTATGTCCTG

Coding sequences of Glyma09g39170

Limit To All Plant Sequences

>Glyma09g39170.3   sequence type=CDS   gene model=Glyma09g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGGGCACAGGATGCAAACCAATCATTCTTCCCTTTTGGAAATCCTTTTAGGATGATATCACCTAAAAGCCCTAAAATTTCTTCACAGCTGTTGTTAATTCTACATGCTTTTGAAGCAACTTTGGAAGAGAGGCTGAAAAAGCTTATTCCCAAGAGCAAGGATGAGATCCTCAGCTTGTCTTGGATGACTTTGGCTATGCAGTCACTTTGTGAGAGCCATAATGACATTAAAACCATCATAACAGAGCTTGAGCTTCCTGTACATGATTGGGATGAGAAATGGATAGACGTGTACTTGGACATTAGTGTGAAGTTGCTAGATATATGCATTGCATTTAGCTCTGAATTATCACGCCTGAACCAGGGTCATCTTTTACTTCAGTGTGCATTGCACAATTTAGGTTCTTCCTCTTCAGAGCAGTATGTTCGGGCATGTTCTTCACTTGATGGTTGGAAACAGCATATTGGTTCTGGAAACCCTAGGATTGAGAAATGTGGCAGCATTTTGGATGATCTTCTGCGGTCACTTGATCTTCCAAAGGTTAAAAAGTCCGCTAAAGGAAAGGTTTTGATGCAAGCTATGTATGGAGTAAAGGTGCAGACAGTATTTGTATGCAGTGTGTTTGCTGCGGCTTTTTCGGGCTCTACAAAGAATATGTCAGATTTGAATGTGGCTGATGTATATTCTTGGGCTCCAACCTTTAAAAGTTTGCAAGATCTTGTAAATGAGGAAATTAGAGTAAGATTTTCAAGTGGGAGATTTACTATATTGAATGAGTTGGAAGTAGTTGATTCCTCTGTGAAGGAATTATATCCTATTATCCAGGGCATTGCAGATACCATTGAGACAGAATCACTTGCGAAGATTGTTGGGGAATTAAGCAGAGCAACAGAGAAGCTTTCACAAGGACTAGATCTTCTTACAAAGGAAGTCGATAGCTTTTTCCAAGTGGTCTTGACCGGTCGTGATACCTTGCTATCTAGTCTGAGGTCAGGTGCAACTTTCATTGACAGCATTCAGGCGGGTAACAGAGATGCACAAATAGTCAATTGA

>Glyma09g39170.4   sequence type=CDS   gene model=Glyma09g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGGGCACAGGATGCAAACCAATCATTCTTCCCTTTTGGAAATCCTTTTAGGATGATATCACCTAAAAGCCCTAAAATTTCTTCACAGCTGTTGTTAATTCTACATGCTTTTGAAGCAACTTTGGAAGAGAGGCTGAAAAAGCTTATTCCCAAGAGCAAGGATGAGATCCTCAGCTTGTCTTGGATGACTTTGGCTATGCAGTCACTTTGTGAGAGCCATAATGACATTAAAACCATCATAACAGAGCTTGAGCTTCCTGTACATGATTGGGATGAGAAATGGATAGACGTGTACTTGGACATTAGTGTGAAGTTGCTAGATATATGCATTGCATTTAGCTCTGAATTATCACGCCTGAACCAGGGTCATCTTTTACTTCAGTGTGCATTGCACAATTTAGGTTCTTCCTCTTCAGAGCAGTATGTTCGGGCATGTTCTTCACTTGATGGTTGGAAACAGCATATTGGTTCTGGAAACCCTAGGATTGAGAAATGTGGCAGCATTTTGGATGATCTTCTGCGGTCACTTGATCTTCCAAAGGTTAAAAAGTCCGCTAAAGGAAAGGTTTTGATGCAAGCTATGTATGGAGTAAAGGTGCAGACAGTATTTGTATGCAGTGTGTTTGCTGCGGCTTTTTCGGGCTCTACAAAGAATATGTCAGATTTGAATGTGGCTGATGTATATTCTTGGGCTCCAACCTTTAAAAGTTTGCAAGATCTTGTAAATGAGGAAATTAGAGTAAGATTTTCAAGTGGGAGATTTACTATATTGAATGAGTTGGAAGTAGTTGATTCCTCTGTGAAGGAATTATATCCTATTATCCAGGGCATTGCAGATACCATTGAGACAGAATCACTTGCGAAGATTGTTGGGGAATTAAGCAGAGCAACAGAGAAGCTTTCACAAGGACTAGATCTTCTTACAAAGGAAGTCGATAGCTTTTTCCAAGTGGTCTTGACCGGTCGTGATACCTTGCTATCTAGTCTGAGGTCAGGTGCAACTTTCATTGACAGCATTCAGGCGGGTAACAGAGATGCACAAATAGTCAATTGA

Predicted protein sequences of Glyma09g39170

Limit To All Plant Sequences

>Glyma09g39170.3   sequence type=predicted peptide   gene model=Glyma09g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRAQDANQSFFPFGNPFRMISPKSPKISSQLLLILHAFEATLEERLKKLIPKSKDEILSLSWMTLAMQSLCESHNDIKTIITELELPVHDWDEKWIDVYLDISVKLLDICIAFSSELSRLNQGHLLLQCALHNLGSSSSEQYVRACSSLDGWKQHIGSGNPRIEKCGSILDDLLRSLDLPKVKKSAKGKVLMQAMYGVKVQTVFVCSVFAAAFSGSTKNMSDLNVADVYSWAPTFKSLQDLVNEEIRVRFSSGRFTILNELEVVDSSVKELYPIIQGIADTIETESLAKIVGELSRATEKLSQGLDLLTKEVDSFFQVVLTGRDTLLSSLRSGATFIDSIQAGNRDAQIVN*

>Glyma09g39170.4   sequence type=predicted peptide   gene model=Glyma09g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRAQDANQSFFPFGNPFRMISPKSPKISSQLLLILHAFEATLEERLKKLIPKSKDEILSLSWMTLAMQSLCESHNDIKTIITELELPVHDWDEKWIDVYLDISVKLLDICIAFSSELSRLNQGHLLLQCALHNLGSSSSEQYVRACSSLDGWKQHIGSGNPRIEKCGSILDDLLRSLDLPKVKKSAKGKVLMQAMYGVKVQTVFVCSVFAAAFSGSTKNMSDLNVADVYSWAPTFKSLQDLVNEEIRVRFSSGRFTILNELEVVDSSVKELYPIIQGIADTIETESLAKIVGELSRATEKLSQGLDLLTKEVDSFFQVVLTGRDTLLSSLRSGATFIDSIQAGNRDAQIVN*

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