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Report for Sequence Feature Glyma09g39130

Feature Type:gene_model
Chromosome:Gm09
Start:44284760
stop:44288191
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g39130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01310AT Annotation by Michelle Graham. TAIR10: Ribosomal L5P family protein | chr4:544166-545480 REVERSE LENGTH=262 SoyBaseE_val: 5.00E-133ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0398 KOG Mitochondrial/chloroplast ribosomal protein L5/L7 JGI ISS
PTHR11994Panther 60S RIBOSOMAL PROTEIN L11-RELATED JGI ISS
PTHR11994:SF4Panther 50S RIBOSOMAL PROTEIN L5 JGI ISS
PF00281PFAM Ribosomal protein L5 JGI ISS
PF00673PFAM ribosomal L5P family C-terminus JGI ISS
UniRef100_G7L6M1UniRef Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L5 n=1 Tax=Medicago truncatula RepID=G7L6M1_MEDTR SoyBaseE_val: 4.00E-145ISS
UniRef100_UPI0002338906UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338906 related cluster n=1 Tax=unknown RepID=UPI0002338906 SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g39130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39130
ParalogEvidenceComments
Glyma18g47200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g255500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g39130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g39130
>Glyma09g39130.2   sequence type=CDS   gene model=Glyma09g39130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGCTCCTTCGCTTCTACACTCATCTGGGTCCTCTTTCTTCTCTCAATTTCGTGCCTTTCAATTCTCTTCTTCTTTGCTGTTCCCTCATAGTAACAAGCATGGGAATGCACTGGTCTCTGTGAAGGCCTCTGTTTCTGGGGTTGTGTTGGTGGAGAAGTCTGAGGCAGAGAAGGCCAATAGGCTCAAAACAGCTTACACTGAGAAAATTATTCCCTTGCTCATGGAAGAGTTCTCCTACACCAACAAACACCAGGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCACAGGGCAGAGACCTATTAAGACTCGGGCCAGGGCTTCTCTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAATATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAACTACAGCATTGGCATTAAGGACCAGGGTGTCTTCCCAGAGATCAGAGCTGATGTTGTTGGTAAGCCTCGGGGAATGGATATCTGCATCGCAACAACAGCTAAAACCGACCAAGAAGCACACAAATTGTTGGCTCTTATGGGTATGCCCTTCAGAGAGGGAAGTGGTCCCGCCACCACAATTCGGAAAAAGAAGCTCAAGTCTCATCATTTTGATGCAAAATCAAAGGGAAGAGGAAGGAAGTGA
Predicted protein sequences of Glyma09g39130
>Glyma09g39130.2   sequence type=predicted peptide   gene model=Glyma09g39130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAPSLLHSSGSSFFSQFRAFQFSSSLLFPHSNKHGNALVSVKASVSGVVLVEKSEAEKANRLKTAYTEKIIPLLMEEFSYTNKHQVPKIEKIVVNCGIGDAAQNAKGLDAAISDLALITGQRPIKTRARASLATFKIREGQPLGISVTLRGNMMYSFLDRVVNLGLPRTRDFQGVNPNSFDGHGNYSIGIKDQGVFPEIRADVVGKPRGMDICIATTAKTDQEAHKLLALMGMPFREGSGPATTIRKKKLKSHHFDAKSKGRGRK*






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