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Report for Sequence Feature Glyma09g39070

Feature Type:gene_model
Chromosome:Gm09
Start:44238975
stop:44242315
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g39070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01490AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177 SoyBaseE_val: 5.00E-54ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF56Panther SUBFAMILY NOT NAMED JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_I1L6F7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6F7_SOYBN SoyBaseE_val: 2.00E-110ISS
UniRef100_O03982UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heavy-metal-associated domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=O03982_ARATH SoyBaseE_val: 2.00E-51ISS

Expression Patterns of Glyma09g39070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39070
ParalogEvidenceComments
Glyma18g47270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g255100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g39070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g39070
>Glyma09g39070.1   sequence type=CDS   gene model=Glyma09g39070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAATTTGTACTCAAGTTAGATTTGCCAGATGACAAGGCAAAGCAGAAGGCCCTGAAAACAGTTTCAACACTTTCAGGGATTGATGCCATCTCTATGGACATGAAGGAGAAGAAATTAACAGTGATAGGAACAGTTGATCCAGTGAATGTTGTGAGCAAACTCCGCAAGTATTGGCAGACAGACATACTCTCAGTAGGTCCAGCAAAGGAGCCCGAGAAGAAAGAGGAGCCAAAGAAAGAAGAGAAGAAAGAGGAGCCAAAGAAAGAGGGTGAAGCCAAAAAGGAAGAGGAGAAAAAGGAAGAGCCTAAGAAAGAAGAAGAGAAGAAGGAAGAGCCAAAGAAAGAAGAAGAGAAGAAGGAAGAGGAGAAGAAGAAAGAGGCACCACCCCCTCCACCAGACCCAGTTTTAGAGCTGGTCAAGGCTTATAGGGCTTATAATCCCCACATGACCACATACTACTATGTTCAAAGCATGGAAGAGAATCCTAATGCTTGTGTCGTTTGTTAA
Predicted protein sequences of Glyma09g39070
>Glyma09g39070.1   sequence type=predicted peptide   gene model=Glyma09g39070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKFVLKLDLPDDKAKQKALKTVSTLSGIDAISMDMKEKKLTVIGTVDPVNVVSKLRKYWQTDILSVGPAKEPEKKEEPKKEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEEPKKEEEKKEEEKKKEAPPPPPDPVLELVKAYRAYNPHMTTYYYVQSMEENPNACVVC*






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