Glyma09g39040 - SoyBase

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Report for Sequence Feature Glyma09g39040

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44201235
stop:	44203532
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01250	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr4:522839-524129 REVERSE LENGTH=298	SoyBase	E_val: 5.00E-80	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7L6P2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7L6P2_MEDTR	SoyBase	E_val: 3.00E-131	ISS
UniRef100_I1L6F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6F6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma09g39040

Locus	Gene Symbol	Protein Name
	WRKY124	WRKY Transcription Factor

Expression Patterns of Glyma09g39040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39040

Paralog	Evidence	Comments
Glyma18g47300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g254800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39040

Limit To All Plant Sequences

>Glyma09g39040.1   sequence type=CDS   gene model=Glyma09g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCGTCGGTGTCTTCCTCATCTTCTTCTTCCTCTGGCTTTGCCTCTTGTTACTTCCACCCTGAAGCTGCTGCTTCTTCTTCTTCCTCTTCCGGCTTCAACATCTTCAAGGGTGAACAAGGAATAAGCCAAGCTTTGTCGCTTTCTGCGTACCCTTTTGAGGCAAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCTAAATCTCAGCCTCTAACGTTGCAGGCCTCTTCACCCTTGTCCTCACTCTCTTCCTATTCCTCTGCTCCACCCAAGTCTGTTTCAACGCAAGAGAAACAACAACAGAGGAGTAAGCAGCCACATGCTGTCACCACCCCACGATCTAAAAGAAGAAAGAACCAGCTTAAGAAAGTTTGTCAAGTACCAGTTGAGAATCTCTCTTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCATATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAAAGAAACAGATCAGACCCAACAATGTTCATAGTGACTTACACTGCTGAGCACAACCACCCTGCACCTACTCACAGAAACTCTCTTGCTGGTTCCACACGCCAGAAGCCATTGGCACCTCAAACAGCCACCACCACTGAAGAAGACTCTGAAAAGAGCAAGAGCTTCACAAAACCCACTTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGCTCCAACACCACCACAAGGGGAAAAATCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGACGAGGAAGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAGCTGAGCCAACTCACTGCTCCTTCTGTTGTCACTGGAGACTGCTTCAGTGACCCCTTTTCTGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGTAGATGA

Predicted protein sequences of Glyma09g39040

Limit To All Plant Sequences

>Glyma09g39040.1   sequence type=predicted peptide   gene model=Glyma09g39040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEAAASSSSSSGFNIFKGEQGISQALSLSAYPFEARSSIEELHELCKPFFSKSQPLTLQASSPLSSLSSYSSAPPKSVSTQEKQQQRSKQPHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTTEEDSEKSKSFTKPTSPATSGAEEEAPTPPQGEKSESREEKEDVMDDEEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCR*

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