Glyma09g39030 - SoyBase

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Report for Sequence Feature Glyma09g39030

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44194515
stop:	44198859
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46110	AT	Annotation by Michelle Graham. TAIR10: ketopantoate hydroxymethyltransferase 1 \| chr2:18954807-18956411 REVERSE LENGTH=347	SoyBase	E_val: 2.00E-164	ISS
GO:0015940	GO-bp	Annotation by Michelle Graham. GO Biological Process: pantothenate biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003864	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	SoyBase	N/A	ISS
KOG2949	KOG	Ketopantoate hydroxymethyltransferase	JGI		ISS
PTHR20881	Panther	3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE	JGI		ISS
PF02548	PFAM	Ketopantoate hydroxymethyltransferase	JGI		ISS
UniRef100_B9I8Q3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ketopantoate hydroxymethyltransferase n=1 Tax=Populus trichocarpa RepID=B9I8Q3_POPTR	SoyBase	E_val: 2.00E-163	ISS
UniRef100_I1L6F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L6F5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39030

Paralog	Evidence	Comments
Glyma18g47310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g254700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39030

Limit To All Plant Sequences

>Glyma09g39030.1   sequence type=CDS   gene model=Glyma09g39030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTGCTAGTTTTCCATGATCTGCTTGGTATGCTGCAACACCCTCATGCTAAAGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAA

Predicted protein sequences of Glyma09g39030

Limit To All Plant Sequences

>Glyma09g39030.1   sequence type=predicted peptide   gene model=Glyma09g39030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQFLVALSRASSTVTNHCLRHLRSTCNVAAEKVTLTRLKQKHRKQEPITVVSTHDYPSAVHVDVAGIDVCHVGDSVSMVIHGHDTTIPITLEQMLAKRPLLVGDLPFGTYESSSNQAVDTAVRMLKEGNMDAIKLEGGSTSRVVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTVASAIKVVEMALAFQEAGCFSVVIECVPAPVAAAVTAALQIPTIGIGAGPFCSGQVLVFHDLLGMLQHPHAKVSPKFCKQYACVGKVIKQALLEYKEDVINGSFPGSLHIPYKICEAEANGFINELQRLGLDKAASAAVEAVQNMDTSKSNGKGNSTKD*

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