Glyma09g39020 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g39020

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44188835
stop:	44193483
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g39020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61540	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:22773399-22775699 FORWARD LENGTH=515	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF200	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_G7L6P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proline iminopeptidase n=1 Tax=Medicago truncatula RepID=G7L6P1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L6F4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L6F4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g39020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g39020

Paralog	Evidence	Comments
Glyma18g47320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g39020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g254600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g39020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g39020

Limit To All Plant Sequences

>Glyma09g39020.2   sequence type=CDS   gene model=Glyma09g39020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTTACTCCACGCGCCACCACTACCTTTTCTGAGAACATTGCTTCATTTCCCTCTTAATAGTATTCATCATTCTTCTCGCGCTTTCTCCTCACTATCTCACTTCACAAAACCCTTTTCTGTTTCCAATCGTTTCTCCTCACATTCTCGCCGAAGCTCACTCCAAATGAACGGAGAAGGCCTCGCCGCCGACGACTCCTCGCCGGATCACGTCACCAAAGACTGGTACTCCGTGCCGGAGCTCCGGTTGCGCGATCATCGCTTCAAGGTTCCTCTCGATCACTCTCTGGGACCCCATTCTTCTCCCAAGATCACTGTTTTCGCTCGTGAAGTCGTTGCAGTTGGGAAAGAAGAGAAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCGGGCGGCCAACTGAATCAGGTGGATGGACTAAAAAAGTCTGTGAAGAATTCCGTCTCATCTTAATGGATCAGCGAGGAACAGGCTTATCAACTCCGTTGACTGTGTCATCAATGTCACAGTTCAAGTCTGCTGATGAATTAGCTGACTTCTTAAAATATTTCCGAGCGGATAATATAGTAAACGATGCAGAGTTTATTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAGAGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAGGACTGAAGCAAGTCCTTATAACTGGAGGAATTCCTCCGATTGGCAGTGGATGTCCTGCAGATTCAGTGTACAAAGCAGGCTTTGAGCAAGCTATACATCAAAATGAGAAGTACTACAAGAGATTCCCTCAAGATATTAAAATTGTTCAAGAACTTGTTAATTATTTGGCTGAACAAGAAGGAGGAGGGGTAGCTCTTCCATCCGGTGGCTTCCTAACTCCAAGAGGGCTGCAGACTCTTGGTCTATCTGGCTTAGGATCCAGAGCTGGTTTCGAAAGCATGCACTATTTGTTTGAGAGTGTATGGGATCCTACTTTAGTTCCGGGAGCACCAAAGAGAATAAGTTACAACTTCCTAAGTTCTTTTGAGAAGTGGTTAAATTTTGATACCAATCCACTCTATGCTCTTCTACATGAATCCATCTATTGTCAGGGTTCTGCTAATAAATGGTCTGCTAATAGTGTAAGGACTGCAGTTGGAGACAAGTTTGATGCAATTAGAGCTGCCAGAGAAAGACTCCCTGTACTTTTTACAGGAGAGATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCTTTCAAAGAGGCAGCTCATATATTGGCAGAGAAGAAGGACTGGCCCCCACTATATGATGTTCAGGTTCTGAATAACAACAAGGTACCTGTTGCGGCAGCTGTGTACTATGAAGACTTGTACGTGAATTTTAAGCTGGCCATGGAAACAGCTTCTCAAATAGCAGGGATTAGGCCATGGATAACTAATGAGTTCATGCATTCTGGCTTGCGTGATGATGGGAGCAAAGTTATTGATCAATTGTTGGGGATGCTAAATGGAAGGAAACCTCTATTTTGA

Predicted protein sequences of Glyma09g39020

Limit To All Plant Sequences

>Glyma09g39020.2   sequence type=predicted peptide   gene model=Glyma09g39020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLHAPPLPFLRTLLHFPLNSIHHSSRAFSSLSHFTKPFSVSNRFSSHSRRSSLQMNGEGLAADDSSPDHVTKDWYSVPELRLRDHRFKVPLDHSLGPHSSPKITVFAREVVAVGKEEKNLPYLLYLQGGPGFECGRPTESGGWTKKVCEEFRLILMDQRGTGLSTPLTVSSMSQFKSADELADFLKYFRADNIVNDAEFIRVRLVPDAGPWTILGQSYGGFCAVTYLSFAPQGLKQVLITGGIPPIGSGCPADSVYKAGFEQAIHQNEKYYKRFPQDIKIVQELVNYLAEQEGGGVALPSGGFLTPRGLQTLGLSGLGSRAGFESMHYLFESVWDPTLVPGAPKRISYNFLSSFEKWLNFDTNPLYALLHESIYCQGSANKWSANSVRTAVGDKFDAIRAARERLPVLFTGEMIFPWMFDEIHALKPFKEAAHILAEKKDWPPLYDVQVLNNNKVPVAAAVYYEDLYVNFKLAMETASQIAGIRPWITNEFMHSGLRDDGSKVIDQLLGMLNGRKPLF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain