SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01470 | AT | Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein | chr1:172295-172826 REVERSE LENGTH=151 | SoyBase | E_val: 2.00E-76 | ISS |
| GO:0009269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to desiccation | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF03168 | PFAM | Late embryogenesis abundant protein | JGI | ISS | |
| UniRef100_I1L6F1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6F1_SOYBN | SoyBase | E_val: 1.00E-104 | ISS |
| UniRef100_P46519 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Desiccation protectant protein Lea14 homolog n=2 Tax=Glycine max RepID=LEA14_SOYBN | SoyBase | E_val: 3.00E-99 | ISS |
|
Glyma09g38990 not represented in the dataset |
Glyma09g38990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g47361 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g38990.2 sequence type=transcript gene model=Glyma09g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATGAATCTTGTTGTGGCTCTCTTTTTAATTTCCTCCTTAATTTGAGGTTAATATTCCCAAAAGAAGAGAGAGAGAGAGTATCGTTCATCCTTATTACAAGGACTGGGCACGTTAAGCTTCACAATTCATTCACATTCACATTGTAGCTCCGTTAACAAGATTCACTTTCATCTATCCACTCACTAACGTGATCACACACTCATCATCATCAATAATGGCGGAGTTGTTGGAAAAGGCCAAAAACTATGTTGCGGAGAAAGTCACCAACATGCCCAAGCCAGAGGCGAGTGTCACCGACGTGGACTTCAAGCGCGTGAGCCGCGACAGCGTCGAGTACTTGGCCAAGGTCTCCGTTCAGAACCCTTATTCCACTTCCATTCCCATTTGTGAGATCAAGTACTCCCTCAAAAGTGCTGGCAGGGAGATAGCAGCAGGAACAATACCTGACCCAGGGTCATTGAAGGCAAGTGACACAACAATGTTGGATGTGCCAGTGAAGGTGCCTCATAGCATATTACTGAGCTTGGCAAAGGACATTGGTGCAGATTGGGACATTGATTACCAATTGGATATTGGACTTGTTATTGACCTTCCTGTCATTGGCAACTTCACCATTCCTCTTTCTCAGAAGGGAGAGATCAAGCTCCCTACCCTCACTGACATGTTTGCCTAATTCCAACTAAAGGCTTAGAACAAAGAAAATAAATCAATAAATACATCCTCCATCATATTTTCCTGTTGTATCAATTTTGGATTTTAGTTTTGGTTTTCTCACTTCATTTTGCCTCTTTTTTTTTCTTTCCTGTATGGATGCGATAAACTACACATCATAATATTTAAAACACATATGGTTTTTGGTAATTCTCTTCTAAAAAATAAAAACAATAATTGTACTCCAAGAATTTGCTAAGTTTCACTCATTCAGAGGATAAATTATTAAATGGTTTGAGGACTATCATATTCTGACAAATAGTTACTTGTATTCAAAGTTTTTCTTGTTTGAAAACATACTTCCTAGCGACTGTGACCGTAAACATTGATGGTATTGAATAGTATTTTTCTCAGTCATAACAAG
>Glyma09g38990.1 sequence type=CDS gene model=Glyma09g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCAGTTGTTGGAAAAGGCCAAAAACTATGTTGCGGAGAAAGTCACCAACATGCCCAAGCCAGAGGCGAGTGTCACCGACGTGGACTTCAAGCGCGTGAGCCGCGACAGCGTCGAGTACTTGGCCAAGGTCTCCGTTCAGAACCCTTATTCCACTTCCATTCCCATTTGTGAGATCAAGTACTCCCTCAAAAGTGCTGGCAGGGAGATAGCAGCAGGAACAATACCTGACCCAGGGTCATTGAAGGCAAGTGACACAACAATGTTGGATGTGCCAGTGAAGGTGCCTCATAGCATATTACTGAGCTTGGCAAAGGACATTGGTGCAGATTGGGACATTGATTACCAATTGGATATTGGACTTGTTATTGACCTTCCTGTCATTGGCAACTTCACCATTCCTCTTTCTCAGAAGGGAGAGATCAAGCTCCCTACCCTCACTGACATGTTTGCCTAA >Glyma09g38990.2 sequence type=CDS gene model=Glyma09g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAGTTGTTGGAAAAGGCCAAAAACTATGTTGCGGAGAAAGTCACCAACATGCCCAAGCCAGAGGCGAGTGTCACCGACGTGGACTTCAAGCGCGTGAGCCGCGACAGCGTCGAGTACTTGGCCAAGGTCTCCGTTCAGAACCCTTATTCCACTTCCATTCCCATTTGTGAGATCAAGTACTCCCTCAAAAGTGCTGGCAGGGAGATAGCAGCAGGAACAATACCTGACCCAGGGTCATTGAAGGCAAGTGACACAACAATGTTGGATGTGCCAGTGAAGGTGCCTCATAGCATATTACTGAGCTTGGCAAAGGACATTGGTGCAGATTGGGACATTGATTACCAATTGGATATTGGACTTGTTATTGACCTTCCTGTCATTGGCAACTTCACCATTCCTCTTTCTCAGAAGGGAGAGATCAAGCTCCCTACCCTCACTGACATGTTTGCCTAA
>Glyma09g38990.1 sequence type=predicted peptide gene model=Glyma09g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQLLEKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVQNPYSTSIPICEIKYSLKSAGREIAAGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDIGLVIDLPVIGNFTIPLSQKGEIKLPTLTDMFA* >Glyma09g38990.2 sequence type=predicted peptide gene model=Glyma09g38990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAELLEKAKNYVAEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVQNPYSTSIPICEIKYSLKSAGREIAAGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQLDIGLVIDLPVIGNFTIPLSQKGEIKLPTLTDMFA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
