SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61570 | AT | Annotation by Michelle Graham. TAIR10: GRIP-related ARF-binding domain-containing protein 1 | chr3:22779637-22783642 REVERSE LENGTH=712 | SoyBase | E_val: 0 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| UniRef100_G7L6Q5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Golgin candidate n=1 Tax=Medicago truncatula RepID=G7L6Q5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023388FD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023388FD related cluster n=1 Tax=unknown RepID=UPI00023388FD | SoyBase | E_val: 0 | ISS |
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Glyma09g38900 not represented in the dataset |
Glyma09g38900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g47410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g253700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g38900.3 sequence type=transcript gene model=Glyma09g38900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTGGAACAAAGATTGCATTGCTAATAAAACGCAGGGATAGATATATAGATTCGAAGGCGAGATCCAGCAGAAATTGCAGCGCGCGCACTTTCAGCCAATCACACAGAACAATTAAAATCTCCCTCTCAACTCAACCATGTGGGGCACAATCGCCAACTTCAAAGAGAACTTGAACAAGATTGCTCTCGACGTTCACTACGCCGCTTACGACGACGATGATGAAGACGACGTCGTTTCCCCTGCCGCCGTCTCCGATCGCCGCAATTCTCACAGCTCCGCGCATTCCATATCGCTTCCTAGGTCGCCGCCTGCCACCAACGGAACATCCGATCACCCCTACGCTCCTGAGATAGAACAATATAAAGCAGAAATCAAGAGACTTCAAGCATCCGAGGCAGAAATTAAAGCACTATCTGTTAATTATGCAGCTCTATTAAAAGAAAAAGAGGAATTTTTTGTCCACAAATTATGATTAAGAAGCTGCCAATTTGATCCACCCACCTTCAATCCTAATATTATGATTAATCTTTCTTTCCAGCACATTGATCATATTGTTAGATTGAATAAAGAAAATGGCTCATTAAAACAGAATTTGGAGGCTACAAGTCCAGCATCTGCAAATGGTGCTTACACAGTCAAGGGAAGTAATGACCAATCACCAAATCGACTGCATAGGTTCACAACTCAAATGAAAAATCGTTATGCTACAAACAATGGAACCACATCTGCTTTGGAATCTGATGCTAGTCAAAGTAAGATGGTATCTAAACATTCAAACTTACAAGTAAAGGGCAAGGAGCAAGCAGATATGATAGAGGGAAAAAGTAGTCCCCCAGCAGCAGTACAACATACTCATGATATACGAAAAATGAAGTTGGAACTAGAGCAAGAACGCAAAAAGTTGGTAAATATTCAGCTAAAACTCCAGGAAGAAGAGAAATTGAACAAGTCTTTCCAGGAGGAGCTTAAATTGCTAAAGTTGGAAAGAGACAAAACAAAAAATGAGGTGAGCAAATTACACAATGAATTGAATGAGAAAATATCTGAAATAAAATGTCTGCAATTGGAGCTGACTAGACGAGAAGATGAAGAAGCAGGTGATTCTGTGGATAGCTTCAAAAGACTAATTGAAACTATAGAGAAGGAAAACACTACTCTTAAGTTGGAAAAGGATGAACTTGAGGCTGCGCTCAAATCACGTAGGATGGCTAGTCAAATGTCACCTGATGATTCTCAGATTCAGAACAAGGTTCCAAGCAGTAACAGTGATGAGCAGTTACCAGATCCTTCCAAAAGTTTTCCAGGGAAAGAAGACTTGGAAAGATCCTTACATAAGCTAAGTAAAGAATTGAAGGAAACACAAAAGGAGAGGGACAAAGCAGTACAAGAATTGACCCGTCTTAAACAGCATTTGTTAGAAAAGGAATTTGAAGAGTCAGAAAAAATGGATGAGGATTTCAAAATCATTGAAGAGCTACGTGATAGCAATAATTATCTGAGAGCTCAAATAACACATCTTGAAAGAACTCTGAAACAGGCAACTGCAAGTCAGGAGAAACTGACGATGGCAAATGACAATGAAATTCTAAAGTCCAGGGAAATCATTGATGACCTGAACAAGAAGCTTACAAACTGTATGAGCACAATAGATGCTAAGAATACTGAACTTTTAAATCTACAGACAGCTCTTGGACAATATTATGCTGAAATTGAAGCTAAGGAACATTTAGAAGGAGATTTGGCTCGTGCAAAGGAAGAAACATCTAAGCTTTCTCAACTGTTGAAAGATGCAGATTGCAGAGCGAATGTATTGATCAGTGAAAAAGAAGAAATTTTAGCCAAGCTTTCTCGATCTGAGAAGGTACAATCAGAATGGAGAAGTAGAGTAAGCAAGCTTGAAGAAGACAATTCCAGATTGAGGCTAGCTGTTGAGCAGAGTATGACACGGCTAAATAGAATGTCAGTGGATTCTGATTTTCTTGTTGACAGGCGCATTGTGATAAAATTACTTGTCACTTATTTCCAGAGAAACCACAGCAAAGAGGTTTTGGATCTAATGGTTCGCATGCTGGGATTCTCTAACGAGGACAAACAAAGAATAGGTGTTGCTCAACAAGGTCCAGGAAAAGGTGTTGTCCGTGGTGTTCTTGGGTTGCCTGGCCGCCTAGTTGGAGGTATCTTGGGAGGAAGTGGTTCATCTGAATCAGCTGCAAATGTAGGAGCAGATAACCAGTCCTTTGCAGATCTGTGGGTTGATTTTCTTCTCAAGGAAACACAAGAAAGAGAGAAGAGGGAGTCAGAAGAAAGAGATAAATCAATGGATGATTCACATGATAAAAGTCTTAATACTAATTCTTCTTCTCCACCCCCTTCCAATCAGAGCTTTAGCACTAGAACAGCATCAATTAACTCACCCACTTATCAAAACATCAGTTCTCACCCTCGTGGGTACTTTAAACATTCCGAACAAATTGGTTCAGAGTTCTCAACAGTTCCCCTTACATCATCAGATAGTAAAACAACTAGTTCAAGACTTCCTAGATACTAAATATACATTTTTTTATGTAATTAAACAAAAGGTATAGATCAATGATAAGTTGTAGACGTGTAATGTTGTTCAATTAATTCTTTCATTTCATTGCCTGTCATCATGGGTGGCTGGCTATTCTTGCATAATTTGAAACACCGGAACTGTGGAAAATTATCCTGATGTATGTCATATAATGCCACACTCTTATCTCTGTAATACATGTAATATATAATATATGATGCACTATGATTCACTAGCCTACGTGCTACTCCCTTTATTAATATTTTTT
>Glyma09g38900.2 sequence type=CDS gene model=Glyma09g38900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGGGCACAATCGCCAACTTCAAAGAGAACTTGAACAAGATTGCTCTCGACGTTCACTACGCCGCTTACGACGACGATGATGAAGACGACGTCGTTTCCCCTGCCGCCGTCTCCGATCGCCGCAATTCTCACAGCTCCGCGCATTCCATATCGCTTCCTAGGTCGCCGCCTGCCACCAACGGAACATCCGATCACCCCTACGCTCCTGAGATAGAACAATATAAAGCAGAAATCAAGAGACTTCAAGCATCCGAGGCAGAAATTAAAGCACTATCTGTTAATTATGCAGCTCTATTAAAAGAAAAAGAGGATCATATTGTTAGATTGAATAAAGAAAATGGCTCATTAAAACAGAATTTGGAGGCTACAAGTCCAGCATCTGCAAATGGTGCTTACACAGTCAAGGGAAGTAATGACCAATCACCAAATCGACTGCATAGGTTCACAACTCAAATGAAAAATCGTTATGCTACAAACAATGGAACCACATCTGCTTTGGAATCTGATGCTAGTCAAAGTAAGATGGTATCTAAACATTCAAACTTACAAGTAAAGGGCAAGGAGCAAGCAGATATGATAGAGGGAAAAAGTAGTCCCCCAGCAGCAGTACAACATACTCATGATATACGAAAAATGAAGTTGGAACTAGAGCAAGAACGCAAAAAGTTGGTAAATATTCAGCTAAAACTCCAGGAAGAAGAGAAATTGAACAAGTCTTTCCAGGAGGAGCTTAAATTGCTAAAGTTGGAAAGAGACAAAACAAAAAATGAGGTGAGCAAATTACACAATGAATTGAATGAGAAAATATCTGAAATAAAATGTCTGCAATTGGAGCTGACTAGACGAGAAGATGAAGAAGCAGGTGATTCTGTGGATAGCTTCAAAAGACTAATTGAAACTATAGAGAAGGAAAACACTACTCTTAAGTTGGAAAAGGATGAACTTGAGGCTGCGCTCAAATCACGTAGGATGGCTAGTCAAATGTCACCTGATGATTCTCAGATTCAGAACAAGGTTCCAAGCAGTAACAGTGATGAGCAGTTACCAGATCCTTCCAAAAGTTTTCCAGGGAAAGAAGACTTGGAAAGATCCTTACATAAGCTAAGTAAAGAATTGAAGGAAACACAAAAGGAGAGGGACAAAGCAGTACAAGAATTGACCCGTCTTAAACAGCATTTGTTAGAAAAGGAATTTGAAGAGTCAGAAAAAATGGATGAGGATTTCAAAATCATTGAAGAGCTACGTGATAGCAATAATTATCTGAGAGCTCAAATAACACATCTTGAAAGAACTCTGAAACAGGCAACTGCAAGTCAGGAGAAACTGACGATGGCAAATGACAATGAAATTCTAAAGTCCAGGGAAATCATTGATGACCTGAACAAGAAGCTTACAAACTGTATGAGCACAATAGATGCTAAGAATACTGAACTTTTAAATCTACAGACAGCTCTTGGACAATATTATGCTGAAATTGAAGCTAAGGAACATTTAGAAGGAGATTTGGCTCGTGCAAAGGAAGAAACATCTAAGCTTTCTCAACTGTTGAAAGATGCAGATTGCAGAGCGAATGTATTGATCAGTGAAAAAGAAGAAATTTTAGCCAAGCTTTCTCGATCTGAGAAGGTACAATCAGAATGGAGAAGTAGAGTAAGCAAGCTTGAAGAAGACAATTCCAGATTGAGGCTAGCTGTTGAGCAGAGTATGACACGGCTAAATAGAATGTCAGTGGATTCTGATTTTCTTGTTGACAGGCGCATTGTGATAAAATTACTTGTCACTTATTTCCAGAGAAACCACAGCAAAGAGGTTTTGGATCTAATGGTTCGCATGCTGGGATTCTCTAACGAGGACAAACAAAGAATAGGTGTTGCTCAACAAGGTCCAGGAAAAGGTGTTGTCCGTGGTGTTCTTGGGTTGCCTGGCCGCCTAGTTGGAGGTATCTTGGGAGGAAGTGGTTCATCTGAATCAGCTGCAAATGTAGGAGCAGATAACCAGTCCTTTGCAGATCTGTGGGTTGATTTTCTTCTCAAGGAAACACAAGAAAGAGAGAAGAGGGAGTCAGAAGAAAGAGATAAATCAATGGATGATTCACATGATAAAAGTCTTAATACTAATTCTTCTTCTCCACCCCCTTCCAATCAGAGCTTTAGCACTAGAACAGCATCAATTAACTCACCCACTTATCAAAACATCAGTTCTCACCCTCGTGGGTACTTTAAACATTCCGAACAAATTGGTTCAGAGTTCTCAACAGTTCCCCTTACATCATCAGATAGTAAAACAACTAGTTCAAGACTTCCTAGATACTAA >Glyma09g38900.3 sequence type=CDS gene model=Glyma09g38900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTAATCTTTCTTTCCAGCACATTGATCATATTGTTAGATTGAATAAAGAAAATGGCTCATTAAAACAGAATTTGGAGGCTACAAGTCCAGCATCTGCAAATGGTGCTTACACAGTCAAGGGAAGTAATGACCAATCACCAAATCGACTGCATAGGTTCACAACTCAAATGAAAAATCGTTATGCTACAAACAATGGAACCACATCTGCTTTGGAATCTGATGCTAGTCAAAGTAAGATGGTATCTAAACATTCAAACTTACAAGTAAAGGGCAAGGAGCAAGCAGATATGATAGAGGGAAAAAGTAGTCCCCCAGCAGCAGTACAACATACTCATGATATACGAAAAATGAAGTTGGAACTAGAGCAAGAACGCAAAAAGTTGGTAAATATTCAGCTAAAACTCCAGGAAGAAGAGAAATTGAACAAGTCTTTCCAGGAGGAGCTTAAATTGCTAAAGTTGGAAAGAGACAAAACAAAAAATGAGGTGAGCAAATTACACAATGAATTGAATGAGAAAATATCTGAAATAAAATGTCTGCAATTGGAGCTGACTAGACGAGAAGATGAAGAAGCAGGTGATTCTGTGGATAGCTTCAAAAGACTAATTGAAACTATAGAGAAGGAAAACACTACTCTTAAGTTGGAAAAGGATGAACTTGAGGCTGCGCTCAAATCACGTAGGATGGCTAGTCAAATGTCACCTGATGATTCTCAGATTCAGAACAAGGTTCCAAGCAGTAACAGTGATGAGCAGTTACCAGATCCTTCCAAAAGTTTTCCAGGGAAAGAAGACTTGGAAAGATCCTTACATAAGCTAAGTAAAGAATTGAAGGAAACACAAAAGGAGAGGGACAAAGCAGTACAAGAATTGACCCGTCTTAAACAGCATTTGTTAGAAAAGGAATTTGAAGAGTCAGAAAAAATGGATGAGGATTTCAAAATCATTGAAGAGCTACGTGATAGCAATAATTATCTGAGAGCTCAAATAACACATCTTGAAAGAACTCTGAAACAGGCAACTGCAAGTCAGGAGAAACTGACGATGGCAAATGACAATGAAATTCTAAAGTCCAGGGAAATCATTGATGACCTGAACAAGAAGCTTACAAACTGTATGAGCACAATAGATGCTAAGAATACTGAACTTTTAAATCTACAGACAGCTCTTGGACAATATTATGCTGAAATTGAAGCTAAGGAACATTTAGAAGGAGATTTGGCTCGTGCAAAGGAAGAAACATCTAAGCTTTCTCAACTGTTGAAAGATGCAGATTGCAGAGCGAATGTATTGATCAGTGAAAAAGAAGAAATTTTAGCCAAGCTTTCTCGATCTGAGAAGGTACAATCAGAATGGAGAAGTAGAGTAAGCAAGCTTGAAGAAGACAATTCCAGATTGAGGCTAGCTGTTGAGCAGAGTATGACACGGCTAAATAGAATGTCAGTGGATTCTGATTTTCTTGTTGACAGGCGCATTGTGATAAAATTACTTGTCACTTATTTCCAGAGAAACCACAGCAAAGAGGTTTTGGATCTAATGGTTCGCATGCTGGGATTCTCTAACGAGGACAAACAAAGAATAGGTGTTGCTCAACAAGGTCCAGGAAAAGGTGTTGTCCGTGGTGTTCTTGGGTTGCCTGGCCGCCTAGTTGGAGGTATCTTGGGAGGAAGTGGTTCATCTGAATCAGCTGCAAATGTAGGAGCAGATAACCAGTCCTTTGCAGATCTGTGGGTTGATTTTCTTCTCAAGGAAACACAAGAAAGAGAGAAGAGGGAGTCAGAAGAAAGAGATAAATCAATGGATGATTCACATGATAAAAGTCTTAATACTAATTCTTCTTCTCCACCCCCTTCCAATCAGAGCTTTAGCACTAGAACAGCATCAATTAACTCACCCACTTATCAAAACATCAGTTCTCACCCTCGTGGGTACTTTAAACATTCCGAACAAATTGGTTCAGAGTTCTCAACAGTTCCCCTTACATCATCAGATAGTAAAACAACTAGTTCAAGACTTCCTAGATACTAA
>Glyma09g38900.2 sequence type=predicted peptide gene model=Glyma09g38900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWGTIANFKENLNKIALDVHYAAYDDDDEDDVVSPAAVSDRRNSHSSAHSISLPRSPPATNGTSDHPYAPEIEQYKAEIKRLQASEAEIKALSVNYAALLKEKEDHIVRLNKENGSLKQNLEATSPASANGAYTVKGSNDQSPNRLHRFTTQMKNRYATNNGTTSALESDASQSKMVSKHSNLQVKGKEQADMIEGKSSPPAAVQHTHDIRKMKLELEQERKKLVNIQLKLQEEEKLNKSFQEELKLLKLERDKTKNEVSKLHNELNEKISEIKCLQLELTRREDEEAGDSVDSFKRLIETIEKENTTLKLEKDELEAALKSRRMASQMSPDDSQIQNKVPSSNSDEQLPDPSKSFPGKEDLERSLHKLSKELKETQKERDKAVQELTRLKQHLLEKEFEESEKMDEDFKIIEELRDSNNYLRAQITHLERTLKQATASQEKLTMANDNEILKSREIIDDLNKKLTNCMSTIDAKNTELLNLQTALGQYYAEIEAKEHLEGDLARAKEETSKLSQLLKDADCRANVLISEKEEILAKLSRSEKVQSEWRSRVSKLEEDNSRLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSNEDKQRIGVAQQGPGKGVVRGVLGLPGRLVGGILGGSGSSESAANVGADNQSFADLWVDFLLKETQEREKRESEERDKSMDDSHDKSLNTNSSSPPPSNQSFSTRTASINSPTYQNISSHPRGYFKHSEQIGSEFSTVPLTSSDSKTTSSRLPRY* >Glyma09g38900.3 sequence type=predicted peptide gene model=Glyma09g38900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MINLSFQHIDHIVRLNKENGSLKQNLEATSPASANGAYTVKGSNDQSPNRLHRFTTQMKNRYATNNGTTSALESDASQSKMVSKHSNLQVKGKEQADMIEGKSSPPAAVQHTHDIRKMKLELEQERKKLVNIQLKLQEEEKLNKSFQEELKLLKLERDKTKNEVSKLHNELNEKISEIKCLQLELTRREDEEAGDSVDSFKRLIETIEKENTTLKLEKDELEAALKSRRMASQMSPDDSQIQNKVPSSNSDEQLPDPSKSFPGKEDLERSLHKLSKELKETQKERDKAVQELTRLKQHLLEKEFEESEKMDEDFKIIEELRDSNNYLRAQITHLERTLKQATASQEKLTMANDNEILKSREIIDDLNKKLTNCMSTIDAKNTELLNLQTALGQYYAEIEAKEHLEGDLARAKEETSKLSQLLKDADCRANVLISEKEEILAKLSRSEKVQSEWRSRVSKLEEDNSRLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSNEDKQRIGVAQQGPGKGVVRGVLGLPGRLVGGILGGSGSSESAANVGADNQSFADLWVDFLLKETQEREKRESEERDKSMDDSHDKSLNTNSSSPPPSNQSFSTRTASINSPTYQNISSHPRGYFKHSEQIGSEFSTVPLTSSDSKTTSSRLPRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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