Glyma09g38800 - SoyBase

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Report for Sequence Feature Glyma09g38800

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44063878
stop:	44066752
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16510	AT	Annotation by Michelle Graham. TAIR10: Alpha-1,4-glucan-protein synthase family protein \| chr5:5393296-5394342 FORWARD LENGTH=348	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0030054	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell junction	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008466	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycogenin glucosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
PF03214	PFAM	Reversibly glycosylated polypeptide	JGI		ISS
UniRef100_I1L6D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6D0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HV87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1,4-glucan-protein synthase n=1 Tax=Medicago truncatula RepID=Q2HV87_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38800 not represented in the dataset	Glyma09g38800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38800

Paralog	Evidence	Comments
Glyma18g47520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g252600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g38800

Limit To All Plant Sequences

>Glyma09g38800.5   sequence type=transcript   gene model=Glyma09g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGTTTGCTCGTAAATTGCTGTTGTTGTTGTTGCATTCGTATCATTGAAAGGTTATGCAGCTGCAAGCTCTTTGGCCTTTCTTTTCTTATCATTTTCTAGAATATTGAAGGCTGGGAAGCTGACTGAGAAAGTTCTGAGACTTTTTATAGCAACTGGTAAGGATGAAGTCCTCTCATTTGTTCAGGCACTCAATATCCAACATATTTTGACCCCTGTGCTTCCCACCAGGTGTTCTGAGGCAAAATCAGACTTTTAGTTTGTAAGATAGTCTGTACCTTGCAAGATGTCTCAAGCAGTTATCAACGATAATGAAGTGGACATTGTGATTGGTGCACTGCATTCTGATCTTACAACTTTTATGAATGAATGGAGGCCAATTTTCTCCCGCTTTCACCTGATAATAGTAAAAGATCCTGACCTCAAGGAGGAACTCCAAATTCCTGTAGGCTTCAGCGTGGATGTGTATACAAAGTCTCAGATCGAGCAAGTGGTGGGTTCTTCCACTTCTGTTCGCTTCTCTGGCTATGCTTGTAGATATTTTGGCTTCCTAATTTCACGGAAAAAGTATGTTGTCTGCATTGATGATGATTGTGTTCCTGCAAAAGATAATTCAGGGATTTTGGTGGATGCTGTGGCTCAGCATATTGTGAACCTGCAGACTCCTGCCACCCCCTTCTTCTTTAATACACTGTATGATCCATTCTGTAAGGGTGCAGATTTTGTTCGTGGGTACCCATTCAGCCTGCGAAGTGGGGTTGATTGTGCTCTGTCATGTGGGTTATGGCTCAATCTGGCTGACCTTGATGCTCCAACACAAGCTCTCAAGCCAGGGCAGAGGAATTTGCGATATGTAGATGCAGTTCTGACTGTTCCTTCGAGAGCCATGGTGCCCGTGAGTGGAATCAACATTGCCTTTAACCGTGAAGCTGTTGGTCCAGCATTGGTCCCGGCTTTGAGGCTGGCAGGGGAAGGGAAATTGAGGTGGGAAACTATGGAAGATATATGGTGTGGAATGTGTGTGAAAGTTATATGTGATCACCTAGGCCTTGGTGTGAAAAGTGGGTTACCTTATGTTTGGAGAACAGAAAGGGGTGATGCAATACAGAGCTTGAAGAAAGAGTGGGAAGGGGTGAAATTGATGGAGGATGTTGTTCCTTTCTTTCAGTCATTAAGGTTGCCACAATCAGCAACTACAGCAGAGGCTTGCGTGGTCGAGGTGGCCAAAACAGTGAAGGAGCACCTGGGGAAGGTTGATCCTATGTTTTCAGAGGCTGCTCAAGCCATGGAAGAGTGGGTCAAGCTCTGGAAGTCAGTTAGATCTGGTTAAAGCTCCTGAACTTGAGGACTCTTGTAGGAGTGAAGGTTATTGCCTTATTGGCTTCTATATTTCTTTATGTTATTTAACTAATTTATAGCTGCCTTTTTTTTCCAGTTTGTAGTGAACTAAGCTTACATTTTACCTGACACAGACTAAAGGCTGAATAAAATGATGATAATACTTATTGGTTTTGTGACAATTGAATAAATTCTGTCTTGCTTTGTCAATAATTGGTCTTTGAACAGAATTCTGA

Coding sequences of Glyma09g38800

Limit To All Plant Sequences

>Glyma09g38800.4   sequence type=CDS   gene model=Glyma09g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAAGCAGTTATCAACGATAATGAAGTGGACATTGTGATTGGTGCACTGCATTCTGATCTTACAACTTTTATGAATGAATGGAGGCCAATTTTCTCCCGCTTTCACCTGATAATAGTAAAAGATCCTGACCTCAAGGAGGAACTCCAAATTCCTGTAGGCTTCAGCGTGGATGTGTATACAAAGTCTCAGATCGAGCAAGTGGTGGGTTCTTCCACTTCTGTTCGCTTCTCTGGCTATGCTTGTAGATATTTTGGCTTCCTAATTTCACGGAAAAAGTATGTTGTCTGCATTGATGATGATTGTGTTCCTGCAAAAGATAATTCAGGGATTTTGGTGGATGCTGTGGCTCAGCATATTGTGAACCTGCAGACTCCTGCCACCCCCTTCTTCTTTAATACACTGTATGATCCATTCTGTAAGGGTGCAGATTTTGTTCGTGGGTACCCATTCAGCCTGCGAAGTGGGGTTGATTGTGCTCTGTCATGTGGGTTATGGCTCAATCTGGCTGACCTTGATGCTCCAACACAAGCTCTCAAGCCAGGGCAGAGGAATTTGCGATATGTAGATGCAGTTCTGACTGTTCCTTCGAGAGCCATGGTGCCCGTGAGTGGAATCAACATTGCCTTTAACCGTGAAGCTGTTGGTCCAGCATTGGTCCCGGCTTTGAGGCTGGCAGGGGAAGGGAAATTGAGGTGGGAAACTATGGAAGATATATGGTGTGGAATGTGTGTGAAAGTTATATGTGATCACCTAGGCCTTGGTGTGAAAAGTGGGTTACCTTATGTTTGGAGAACAGAAAGGGGTGATGCAATACAGAGCTTGAAGAAAGAGTGGGAAGGGGTGAAATTGATGGAGGATGTTGTTCCTTTCTTTCAGTCATTAAGGTTGCCACAATCAGCAACTACAGCAGAGGCTTGCGTGGTCGAGGTGGCCAAAACAGTGAAGGAGCACCTGGGGAAGGTTGATCCTATGTTTTCAGAGGCTGCTCAAGCCATGGAAGAGTGGGTCAAGCTCTGGAAGTCAGTTAGATCTGGTTAA

>Glyma09g38800.5   sequence type=CDS   gene model=Glyma09g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAAGCAGTTATCAACGATAATGAAGTGGACATTGTGATTGGTGCACTGCATTCTGATCTTACAACTTTTATGAATGAATGGAGGCCAATTTTCTCCCGCTTTCACCTGATAATAGTAAAAGATCCTGACCTCAAGGAGGAACTCCAAATTCCTGTAGGCTTCAGCGTGGATGTGTATACAAAGTCTCAGATCGAGCAAGTGGTGGGTTCTTCCACTTCTGTTCGCTTCTCTGGCTATGCTTGTAGATATTTTGGCTTCCTAATTTCACGGAAAAAGTATGTTGTCTGCATTGATGATGATTGTGTTCCTGCAAAAGATAATTCAGGGATTTTGGTGGATGCTGTGGCTCAGCATATTGTGAACCTGCAGACTCCTGCCACCCCCTTCTTCTTTAATACACTGTATGATCCATTCTGTAAGGGTGCAGATTTTGTTCGTGGGTACCCATTCAGCCTGCGAAGTGGGGTTGATTGTGCTCTGTCATGTGGGTTATGGCTCAATCTGGCTGACCTTGATGCTCCAACACAAGCTCTCAAGCCAGGGCAGAGGAATTTGCGATATGTAGATGCAGTTCTGACTGTTCCTTCGAGAGCCATGGTGCCCGTGAGTGGAATCAACATTGCCTTTAACCGTGAAGCTGTTGGTCCAGCATTGGTCCCGGCTTTGAGGCTGGCAGGGGAAGGGAAATTGAGGTGGGAAACTATGGAAGATATATGGTGTGGAATGTGTGTGAAAGTTATATGTGATCACCTAGGCCTTGGTGTGAAAAGTGGGTTACCTTATGTTTGGAGAACAGAAAGGGGTGATGCAATACAGAGCTTGAAGAAAGAGTGGGAAGGGGTGAAATTGATGGAGGATGTTGTTCCTTTCTTTCAGTCATTAAGGTTGCCACAATCAGCAACTACAGCAGAGGCTTGCGTGGTCGAGGTGGCCAAAACAGTGAAGGAGCACCTGGGGAAGGTTGATCCTATGTTTTCAGAGGCTGCTCAAGCCATGGAAGAGTGGGTCAAGCTCTGGAAGTCAGTTAGATCTGGTTAA

Predicted protein sequences of Glyma09g38800

Limit To All Plant Sequences

>Glyma09g38800.4   sequence type=predicted peptide   gene model=Glyma09g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQAVINDNEVDIVIGALHSDLTTFMNEWRPIFSRFHLIIVKDPDLKEELQIPVGFSVDVYTKSQIEQVVGSSTSVRFSGYACRYFGFLISRKKYVVCIDDDCVPAKDNSGILVDAVAQHIVNLQTPATPFFFNTLYDPFCKGADFVRGYPFSLRSGVDCALSCGLWLNLADLDAPTQALKPGQRNLRYVDAVLTVPSRAMVPVSGINIAFNREAVGPALVPALRLAGEGKLRWETMEDIWCGMCVKVICDHLGLGVKSGLPYVWRTERGDAIQSLKKEWEGVKLMEDVVPFFQSLRLPQSATTAEACVVEVAKTVKEHLGKVDPMFSEAAQAMEEWVKLWKSVRSG*

>Glyma09g38800.5   sequence type=predicted peptide   gene model=Glyma09g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQAVINDNEVDIVIGALHSDLTTFMNEWRPIFSRFHLIIVKDPDLKEELQIPVGFSVDVYTKSQIEQVVGSSTSVRFSGYACRYFGFLISRKKYVVCIDDDCVPAKDNSGILVDAVAQHIVNLQTPATPFFFNTLYDPFCKGADFVRGYPFSLRSGVDCALSCGLWLNLADLDAPTQALKPGQRNLRYVDAVLTVPSRAMVPVSGINIAFNREAVGPALVPALRLAGEGKLRWETMEDIWCGMCVKVICDHLGLGVKSGLPYVWRTERGDAIQSLKKEWEGVKLMEDVVPFFQSLRLPQSATTAEACVVEVAKTVKEHLGKVDPMFSEAAQAMEEWVKLWKSVRSG*

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