Glyma09g38791 - SoyBase

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Report for Sequence Feature Glyma09g38791

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44059929
stop:	44061330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38791

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65080	AT	Annotation by Michelle Graham. TAIR10: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain \| chr1:24176619-24180729 FORWARD LENGTH=525	SoyBase	E_val: 3.00E-30	ISS
GO:0051205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein insertion into membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
UniRef100_G7KQL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ALBINO3-like protein n=2 Tax=Medicago truncatula RepID=G7KQL5_MEDTR	SoyBase	E_val: 1.00E-71	ISS
UniRef100_I1L6C7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L6C7_SOYBN	SoyBase	E_val: 5.00E-101	ISS

Expression Patterns of Glyma09g38791

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g38791 not represented in the dataset	Glyma09g38791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38791

Paralog	Evidence	Comments
Glyma18g47545	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38791 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma09g38791

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38791

Limit To All Plant Sequences

>Glyma09g38791.1   sequence type=CDS   gene model=Glyma09g38791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTTGTAGTAATATTATACTCTAATATACTCTTGCAGGGTAGCCAGCTCTATTGGGTTACCAATAGTTCATTAACCCTCATTCAGCAAATAACTCTTAGACATCCTGCTGTCCTTGCAAAGTTGGGGTTACTGGACAATAGTCCAAAGGGAGCTTCTGAGGAAATTGGTGCTTCTAAAACAGCTCCTTCACCAGGGTTACAAGATAATATTCCAACAGCAGCTATCAAGGAAACTGTTTCGCCTGAAAAAAATCCTCTGGATTCACCTGAAAAGTGGCATAGAATACCTATAGAGGAGATGTCCCCAAAAGAACTGATTACTCTTGCAGTCCTATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCCTTACTAAAACTAGCCCTTGATAAGGACCCTGAATATGTACGAGCTTTAGTTTTGATGGGACGGGTTCTATTGCTGAAGCATGTAAATGATGAAGCTCATGAGTACTTCGAGCGTGCAATATCGAAACTTTCTCTTGCGGAAGAAGTTGATCTTCCCAGAGGGCTGGAATTGCCTGCGAACGGCAGGGGAAACACATTGTTCTCTGAGAAAACTTTTGTCTCACAGGGAAAGAGCCAGAAGATCCAACTAGCAAAGGCTATTATTTTGATGGGTTAG

Predicted protein sequences of Glyma09g38791

Limit To All Plant Sequences

>Glyma09g38791.1   sequence type=predicted peptide   gene model=Glyma09g38791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVVVILYSNILLQGSQLYWVTNSSLTLIQQITLRHPAVLAKLGLLDNSPKGASEEIGASKTAPSPGLQDNIPTAAIKETVSPEKNPLDSPEKWHRIPIEEMSPKELITLAVLFLNSDDKESAIPLLKLALDKDPEYVRALVLMGRVLLLKHVNDEAHEYFERAISKLSLAEEVDLPRGLELPANGRGNTLFSEKTFVSQGKSQKIQLAKAIILMG*

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