Glyma09g38770 - SoyBase

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Report for Sequence Feature Glyma09g38770

Feature Type:	gene_model
Chromosome:	Gm09
Start:	44049910
stop:	44057178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g38770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16520	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:5394740-5397371 REVERSE LENGTH=608	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L6C6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6C6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g38770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g38770

Paralog	Evidence	Comments
Glyma18g47560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g38770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g252300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g38770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g38770

Limit To All Plant Sequences

>Glyma09g38770.1   sequence type=CDS   gene model=Glyma09g38770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTGCCCTGCGAATTCCTTCAACTTCAACACCACCCTCTGCGCGTGCACCCCCGGTCACGTGCTCCAGCACGTGAGGAACACGTGCGTGCTCTACGAGGGGAATTCAACAATCCTCACCGACACCGGCGTCGACTACTACGCGCTGAGCTTCCCCGAGACGCTCTTCGCGTTCGACAGAATCAAGAAGTTCACGCAGTCGCAGGCGGTGTTCTTGGAAGCCACGCTCGTTATGCTTCTCTCGTGGCTTCTGTTCTGCGTGTTTCTGAGGTGCACGAAGCTCGGTGATGGAAGGAACGTTTGGTTCAAAATCAGGTGGTGGATCAGTAGGTTGGATATTTGCTTCGCCACAAGGCACTGGCTGGATGATCAGAAAGTGGTCACTAAACGCAAAACAGAACTTGGTGGAGCTTTCTCCATAGCAAGTTGGATACTATTTATTGGTTTGTTTGCTGCGTTGCTGTACCAGATCATATCAAAGAGATCAATTGAGGTGCACAATGTAAGAGCAACAAATGGACAAGAGTTAGCCTCTTATTTCAATGACATGGAGTTCAATATAACAACTGTATCTAGTATGAGCTGTGCAAATCTACGTAATCTAGGTAATGTAGTTACTGGGAATCCTGGCTTTATCGACCAAAGAGTTGTTCCTCTGTCGACTTTAGCAAACTACTCTTGTTACAACTCAAGCACGGGGCCAACTGTAGTATTCAAGTGTAAAAATTGCAAGGTCATCTATGATCACATGTACATTTCGTGGCAGTTTGTTGATCTCCCCAATAATCCTGCCACTGCTGTTGGTTTTGAGTTCAAACTCACTTCAATGGATATTGCTAAGAAACATGTGAGTTTTGTTAGTGGAACATTAAAGAATGGAAGCAATTTCGATAATAGCCCGGTTACATTCAGAGGGAAGCAATCAAATATTTTGAAATTCAATTTGTTCCCTCGAATATATCATAATTTACATGAGCTAAAGCTCATACAGCCTTTATTTCACGAGTTCCTCCCAGGTTCAGCTTCTCGTGATACAAATGAGCTTCGAGCATCCCTTGAAAGTTCTACCGATGGACTAGTCAACACCACATTGTTTATCAATTTTCTCTCTGATTATGTTGTGGAGATCGATAAAGAGAATATTTTGGGTCCTGTGAGCTTCCTTGCGGACCTTGGTGGCTTGTATTGTATTAGCATAGGCATCTTTTTCTACCTGTTGATACAGTGCGAGTATAGGATAAAGAAGCTCAGAAATGAAGATAGCATTATGCGCAGAATTAGAAATCGGCGTAAAGCTCAAGAGCATTGGGACAAACTGAGGAAATATGTAATGTACACCTACGGCTGTCCTACAATAGAAGACAACTACAATAGCACTGGAAAGGAAACAGATTGTGGTGGATGCATGTTGCATTCAATTCGTGGTAGTGGTTCATCACGTAAACGAAGGCTGAAAAGCAGAAAAGATTCTATAAGTTTGTACCAGAAACCTAGCTTACCTGATATCAAGTCAGTGAGCTGCAAACCGCTTGGATCCACAAATGATTCCAAATTGCATTCAGAGAATATGACAAAGCAGCAGAATGCTGGTTCATGCAAGGATTCCCCTCAGTCTCAGTCTCAAGAATCTTCTATTATTGATGATAACTTCATTCCTCCTCTACCTTCACTAGAAATTAAAGGTGGCTCTGAAATGGACTTGTCCGATATTCAGAAGAATCTAAAAAATTTGTACGAGTATAATGTCATGCTAAGGAACAAATTATTAGCTGCACAATCTCTGCTCAATTCTTCCTCAACTGGGCACACTTCTTCAGTAAACAAGGAAACTTAG

Predicted protein sequences of Glyma09g38770

Limit To All Plant Sequences

>Glyma09g38770.1   sequence type=predicted peptide   gene model=Glyma09g38770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATCPANSFNFNTTLCACTPGHVLQHVRNTCVLYEGNSTILTDTGVDYYALSFPETLFAFDRIKKFTQSQAVFLEATLVMLLSWLLFCVFLRCTKLGDGRNVWFKIRWWISRLDICFATRHWLDDQKVVTKRKTELGGAFSIASWILFIGLFAALLYQIISKRSIEVHNVRATNGQELASYFNDMEFNITTVSSMSCANLRNLGNVVTGNPGFIDQRVVPLSTLANYSCYNSSTGPTVVFKCKNCKVIYDHMYISWQFVDLPNNPATAVGFEFKLTSMDIAKKHVSFVSGTLKNGSNFDNSPVTFRGKQSNILKFNLFPRIYHNLHELKLIQPLFHEFLPGSASRDTNELRASLESSTDGLVNTTLFINFLSDYVVEIDKENILGPVSFLADLGGLYCISIGIFFYLLIQCEYRIKKLRNEDSIMRRIRNRRKAQEHWDKLRKYVMYTYGCPTIEDNYNSTGKETDCGGCMLHSIRGSGSSRKRRLKSRKDSISLYQKPSLPDIKSVSCKPLGSTNDSKLHSENMTKQQNAGSCKDSPQSQSQESSIIDDNFIPPLPSLEIKGGSEMDLSDIQKNLKNLYEYNVMLRNKLLAAQSLLNSSSTGHTSSVNKET*

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